SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43078

Length: 299 nt

Origin of reads: Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene43078
ATGGGTAAACATGGAAGGCTCAGGTTCGAGTTCGAGTGGCAGCAACGTTCCCACTACAAAGCTGAAGGTGAGCGGATTATGGCCTCCTCATTGAACTGGAGAGTCGGAGTGGAGAAAAATTGAAATTTGGTTCTGAGACAGATCAGAGAGCCCTGCTTACGGGTTTGATGCTTCATTCAAAGGGGCGGCGTCTGATTAAAATGGGAAAATATAAAGATGCACTTGATGTTCTTGGCATGGGAGAGGAGGCCCTCTCCATTTGTGATCCAAAGGTAATGGAGGTGGTGGAAAATGCATCG

Ace file of the UniGene sp_v2.0_unigene43078 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin-associated (UBA)/TS-N domain-containing protein [Arabidopsis thaliana] gb\|AAY34175.1\| At2g12550 [Arabidopsis thaliana] gb\|AEC06204.1\| ubiquitin-associated (UBA)/TS-N domain-containing protein [Arabidopsis thaliana]	-	-	3.0e-15	48%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	61%
Blast2go	ubiquitin-associated ts-n domain-containing protein	-	-	4.42425e-24	76%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7T4Y7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 362 aas, your sequence is shorter than subject: 99 - 552

Fln protein: G*TWKAQVRVRVAATFPLQS*R*ADYGLLIELESRSGEKLKFGSETDQRALLTGLMLHSKGRRLIKMGKYKDALDVLGMGEEALSICDPKVMEVVENAS

Protein Length: 100

Fln nts: ATGGGTAAACATGGAAGGCTCAGGTTCGAGTTCGAGTGGCAGCAACGTTCCCACTACAAAGCTGAAGGTGAGCGGATTATGGCCTCCTCATTGAACTGGAGAGTCGGAGTGGAGAAAAATTGAAATTTGGTTCTGAGACAGATCAGAGAGCCCTGCTTACGGGTTTGATGCTTCATTCAAAGGGGCGGCGTCTGATTAAAATGGGAAAATATAAAGATGCACTTGATGTTCTTGGCATGGGAGAGGAGGCCCTCTCCATTTGTGATCCAAAGGTAATGGAGGTGGTGGAAAATGCATCG

Fln Alignment:

AllPineV4_c40733___IELESRSGEKLKFGSETDQRALLTGLMLHSKGRRLIKMGKYKDALDVLGMGEEALSICDPKVMEVVEN
D7T4Y7_______________IELEDQSGQKVHLGSETDQRAVMMGLMLHANAKQMIKKENYKDALEVLSMGEEAFSLCNPKVIELVDN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
164			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain