SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43054

Length: 341 nt

UniGene Fasta

>sp_v2.0_unigene43054
AGAGGATCTGACCTTTGTTGCATCAGTCCTGTCCATCGGCATCCAGGGGTTTGCAAGGGTTGGATAAATGAATTACCTGGTGTCCTAAAACAAGCAAGATCAGGAGGAAGGGTGAAGAAGAAAGAAAGCGCTCACCATTCCAATTACCATGCCTCTAGCAATACCCAGAAACATCTGTGATGTGCGGATCTTACTCCTCATTGCAGCAGTCCTGTTCATCACCATCCAGATGCGGCTTTTTGCAACGCAGTCTGAGTATGCAGATCGTCTTGCAGCTGCGGTGGAAGCTGAAAATCATTGCACGAGTCAAATGCGACTACTGATTGATCAAATAAGCATTC

Ace file of the UniGene sp_v2.0_unigene43054

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase [Nicotiana tabacum]	-	-	7.0e-18	85%
FL-Next	sp=Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%
Blast2go	alpha-1 3-mannosyl-glycoprotein beta-1 2-n-acetylglucosaminyltransferase	-	-	5.70287e-23	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase.	EC:2.4.1.101	-	5.70287e-23	89%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	N-Glycan biosynthesis	00510		5.70287e-23	89%
Blast2go	Various types of N-glycan biosynthesis	00513		5.70287e-23	89%
Blast2go	Metabolic pathways	01100		5.70287e-23	89%
Blast2go	Protein N-acetylglucosaminyltransferase.	EC:2.4.1.94	-	5.70287e-23	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	hyperosmotic response	GO:0006972	Biological Process	5.70287e-23	89%
Blast2go	N-glycan processing	GO:0006491	Biological Process	5.70287e-23	89%
Blast2go	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	GO:0003827	Molecular Function	5.70287e-23	89%
Blast2go	protein N-acetylglucosaminyltransferase activity	GO:0016262	Molecular Function	5.70287e-23	89%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	5.70287e-23	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 13	IPR004139	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9XGM8

Fln msg: Distance to subject end: 384 aas, your sequence is shorter than subject: 64 - 444

Fln protein: MPLAIPRNICDVRILLLIAAVLFITIQMRLFATQSEYADRLAAAVEAENHCTSQMRLLIDQISI

Protein Length: 65

Fln nts: AGAGGATCTGACCTTTGTTGCATCAGTCCTGTCCATCGGCATCCAGGGGTTTGCAAGGGTTGGATAAATGAATTACCTGGTGTCCTAAAACAAGCAAGATCAGGAGGAAGGGTGAAGAAGAAAGAAAGCGCTCACCATTCCAATTACC_-_ATGCCTCTAGCAATACCCAGAAACATCTGTGATGTGCGGATCTTACTCCTCATTGCAGCAGTCCTGTTCATCACCATCCAGATGCGGCTTTTTGCAACGCAGTCTGAGTATGCAGATCGTCTTGCAGCTGCGGTGGAAGCTGAAAATCATTGCACGAGTCAAATGCGACTACTGATTGATCAAATAAGCATTC

Fln Alignment:

AllPineV4_c40706___CDVRILLLIAAVLFITIQMRLFATQSEYADRLAAAVEAENHCTSQMRLLIDQISI
Q9XGM8_______________CDLRFLLIPAAFMFIYIQMRLFQTQSQYADRLSSAIESENHCTSQMRGLIDEVSI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
308		66		33	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain