SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene42959

Length: 216 nt

UniGene Fasta

>sp_v2.0_unigene42959
CGTCGTGACCTTGGCTGTCACTCATCTTCAATGTCAATCATTTTATTGTCAGCCAGGCCAATCCTCATATTGCACCCTTGTTGAGACTTAAGGAGCTTGTGAGAGTATATGGAGGTGATTTCGCGGCCAAGCTAGCCCATTTACTTGAGATGGAGGTTAAGCACAGATGCAACCAAATACTGGAGCTGGGCTTTCCCTTGGGTGGTATTGCTAAAC

Ace file of the UniGene sp_v2.0_unigene42959

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Triacylglycerol lipase SDP1 n=2 Tax=Arabidopsis RepID=SDP1_ARATH	-	-	5.0e-27	86%
FL-Next	sp=Triacylglycerol lipase SDP1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	86%
Blast2go	patatin-like phospholipase domain-containing protein	-	-	1.72017e-32	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Triacylglycerol lipase.	EC:3.1.1.3	-	1.72017e-32	91%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerolipid metabolism	00561		1.72017e-32	91%
Blast2go	Metabolic pathways	01100		1.72017e-32	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	triglyceride catabolic process	GO:0019433	Biological Process	1.72017e-32	91%
Blast2go	triglyceride lipase activity	GO:0004806	Molecular Function	1.72017e-32	91%
Blast2go	monolayer-surrounded lipid storage body	GO:0012511	Cellular Component	1.72017e-32	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	Patatin/Phospholipase A2-related	IPR002641	-	0.0	-
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LZA6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 323 aas, your sequence is shorter than subject: 71 - 825

Fln protein: S*PWLSLIFNVNHFIVSQANPHIAPLLRLKELVRVYGGDFAAKLAHLLEMEVKHRCNQILELGFPLGGIAK

Protein Length: 72

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTCAATGTCAATCATTTTATTGTCAGCCAGGCCAATCCTCATATTGCACCCTTGTTGAGACTTAAGGAGCTTGTGAGAGTATATGGAGGTGATTTCGCGGCCAAGCTAGCCCATTTACTTGAGATGGAGGTTAAGCACAGATGCAACCAAATACTGGAGCTGGGCTTTCCCTTGGGTGGTATTGCTAAAC

Fln Alignment:

AllPineV4_c40576___LSLIFNVNHFIVSQANPHIAPLLRLKELVRVYGGDFAAKLAHLLEMEVKHRCNQILELGFPLGGIAK
Q9LZA6_______________LKELFNVNHFIVSQANPHIAPLLRLKDLVRAYGGRFAAKLAHLVEMEVKHRCNQVLELGFPLGGLAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain