SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene42759

Length: 292 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene42759
GTCTTCAAAAGTGTGTTCTACCTGAGATAAATAAGTTGATGATATCTCACTCAAATGTGGTTAATATTTCAGTTAGTCGTGTTGCACTGAAGTTATTGAAACTTATGCCTTTGGAAACAATGGAGTCAGAGCTTCCTCGTATTATACAGCAAATTGCAAATCTACTGAAGAGTCGCCCTCATTCTGTAAGAGATGAGGCAAGGGCTTGCTTAGCTGCATGTGCCAAGGAATTAGGACCACAGTATTTGCAGTTCATTGTAAAAACACTACAGACAACATTAACAAGGGGATA

Ace file of the UniGene sp_v2.0_unigene42759 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	55%
Blast2go	down-regulated in metastasis domain-containing protein	-	-	9.22298e-22	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	9.22298e-22	69%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Protein of unknown function DUF1068	IPR010471	-	-
Sma3	Down-regulated-in-metastasis protein	IPR011430	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RWC2

Fln msg: Distance to subject end: 803 aas, your sequence is shorter than subject: 96 - 2535

Fln protein: LQKCVLPEINKLMISHSNVVNISVSRVALKLLKLMPLETMESELPRIIQQIANLLKSRPHSVRDEARACLAACAKELGPQYLQFIVKTLQTTLTRG

Protein Length: 97

Fln nts: GTCTTCAAAAGTGTGTTCTACCTGAGATAAATAAGTTGATGATATCTCACTCAAATGTGGTTAATATTTCAGTTAGTCGTGTTGCACTGAAGTTATTGAAACTTATGCCTTTGGAAACAATGGAGTCAGAGCTTCCTCGTATTATACAGCAAATTGCAAATCTACTGAAGAGTCGCCCTCATTCTGTAAGAGATGAGGCAAGGGCTTGCTTAGCTGCATGTGCCAAGGAATTAGGACCACAGTATTTGCAGTTCATTGTAAAAACACTACAGACAACATTAACAAGGGGATA

Fln Alignment:

AllPineV4_c40284___LQKCVLPEINKLMXXXXXXXXXXXXXVALKLLKLMPLETMESELPRIIQQIANLLKSRPHSVRDEARACLAACAKELGPQYLQFIVKTLQTTLTRG
B9RWC2_______________LHKTVLPMMQKLLDFDSDKVNVNVNVAVLKVLKLLPGDIMDSQLPSIIHRIANHLKNRMESIRDEARLALAACLKELGLEYLKFIVGALRATLKRG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain