SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene42754

Length: 1415 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene42754 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ABI3-interacting protein 1 n=1 Tax=Callitropsis nootkatensis RepID=Q84NF7_9CONI	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	hsp70-interacting protein 1	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on a sulfur group of donors, With a disulfide as acceptor.	EC:1.8.4.-	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	87%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	87%
Blast2go	heat acclimation	GO:0010286	Biological Process	87%
Blast2go	protein oligomerization	GO:0051259	Biological Process	87%
Blast2go	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	GO:0016671	Molecular Function	87%
Blast2go	Hsp70 protein binding	GO:0030544	Molecular Function	87%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSW0

Fln msg: your sequence is shorter than subject: 362 - 401

Fln protein: MGKSEAKDSFADDSDDDMPELEEQFGPSSTARKVPEETASDEEIVESEVELDNEGVIEPDNDPPQKMGDPSIEVTDEKRDEAQMAKSKAMEAMADGDLDEAVNHLTEAIECNPTSAIIYATRASVFVKMKKPNAAIRDANAAIKINPDSAKGYKWRGMARAMLGHWEEAAKDLHLASRLDYDEEISAVLKKVEPNVHKIEDHHRKYERLRREKDERKKERERQRRRAEAQAAYEKAKKQEKTSTCKPCGATGGCSGGMPGGCSGGMPGGFPGGMPAGGMPGGFPGGMPAGGMPGGFPGGMPGDVDMSNILNDPELMAAFSDPDVMTALQDVMKNPANLAKYQANPKIAPVIAKMMGKFAGK*

Protein Length: 363

Fln nts: ATGGGGAAGTCAGAAGCTAAAGATAGTTTTGCGGATGATAGCGATGATGACATGCCAGAACTTGAAGAACAGTTTGGCCCTTCAAGCACCGCCCGGAAAGTGCCTGAGGAAACTGCCAGTGATGAGGAGATAGTTGAATCTGAAGTGGAACTAGATAATGAAGGAGTCATTGAACCAGATAATGATCCTCCTCAAAAAATGGGAGATCCATCTATTGAAGTAACTGACGAAAAACGAGATGAAGCCCAAATGGCAAAGTCAAAAGCAATGGAAGCAATGGCAGATGGTGATTTGGATGAGGCTGTAAATCATCTCACAGAGGCTATTGAATGCAATCCCACATCCGCGATCATTTATGCTACTAGAGCTAGTGTGTTTGTGAAGATGAAGAAACCTAATGCTGCCATTCGGGATGCTAATGCTGCTATCAAGATAAATCCAGACTCTGCAAAAGGTTACAAATGGCGAGGCATGGCAAGAGCAATGCTTGGTCACTGGGAAGAGGCTGCCAAGGACCTGCACCTTGCTTCAAGGCTGGATTATGATGAGGAAATATCAGCTGTTCTAAAGAAGGTTGAACCAAATGTGCATAAAATTGAAGATCATCATAGGAAGTATGAGCGTCTACGTAGGGAAAAGGATGAGAGAAAGAAAGAGCGTGAAAGGCAACGCAGACGTGCTGAAGCTCAGGCGGCATATGAAAAAGCAAAAAAGCAAGAGAAAACCTCCACGTGTAAACCATGTGGGGCTACTGGTGGCTGCTCAGGTGGGATGCCTGGTGGCTGCTCAGGTGGGATGCCTGGTGGCTTCCCAGGTGGTATGCCTGCAGGTGGAATGCCTGGTGGCTTCCCAGGAGGAATGCCTGCAGGTGGAATGCCTGGTGGCTTCCCAGGAGGAATGCCTGGTGATGTTGATATGAGCAACATCTTGAATGATCCAGAGCTGATGGCTGCATTCAGTGATCCAGATGTAATGACAGCACTTCAAGATGTGATGAAGAATCCTGCAAACTTGGCAAAGTATCAGGCAAATCCAAAGATTGCACCTGTCATTGCTAAGATGATGGGCAAGTTTGCTGGAAAATGA___ACAGTATCTTGGTTCAGAGTCTTTAATTTGGTCCGGGAGCAGGTTAGTTGCCCTGTTAAGAGCAGCTAACTAACCCATGGATTTCTTTTTCCGAAGTGTCGCTAAAGGTCTGAAGCTTTTATCAATTTTTTGAGTACATTCTTGTGTGGGTTGTTGCAGAGAGTTTTTTCATCTCAGTTTGCATTCTTTAGGTGTGGTTTTAATGACTACTATAACTGCATTGAGATAATAGTGACATTTCCATTTAGAGAATTCTTAAATTTCAAGGTCTGGTTTTAATGGTGATTATTACTACCTATTGAGATAATGGTCACAATTGCGATTACATT

Fln Alignment:

AllPineV4_c40279___KSEAKXXXXXXXXXDMPELEEQFGPSSTARKVPEETASDEEIVESEVELDNEGVIEPDNDPPQKMGDPSIEVTDEKRDEAQMAKSKAMEAMADGDLDEAVNHLTEAIECNPTSAIIYATRASVFVKMKKPNAAIRDANAAIKINPDSAKGYKWRGMARAMLGHWEEAAKDLHLASRLDYDEEISAVLKKVEPNVHKIEDHH
C0PSW0_______________KPDAKESFVDESDDDMPELEEQFGTSSTAPKVPEETASDDEIVESEVELDNEGVIEPDNDPPQKMGDPSVDVTDEKRDEAQIAKSKAMEAMADGDLDEAVNHLTEAIECNPTSAIIYATRASVFVKMKKPNAAIRDANAAIKINPDSAKGYKWRGMARAMLGHWEEAAKDLHLASRLDYDEEISVVLKKVEPNVHKIEDHH

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
104	25			75	0.996473
107		75	25		0.996473
809	8	4	88		0.999262
1247	3		7	84	0.99801
1248	7			92	0.999664
1262	92			7	0.999602
1265	88		11		1.0
1266	11			84	1.0
1267		92	7		0.999664
1270		8	88		0.999262
1271	8			88	0.999262
1272		4	8	88	0.999262
1274	92	8			0.999718
1276	8		4	88	0.999262
1278	88			4	0.999262
1279		92	8		0.999718
1283	4		12	84	1.0
1284	12			88	1.0
1286	88		11		1.0
1301		5		83	0.999887
1302		11		88	0.999937
1305			88	11	0.999937
1427		14		85	0.993534
1428		14		85	0.993534
1430			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain