SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene42512

Length: 225 nt

UniGene Fasta

>sp_v2.0_unigene42512
ATGGGGGCACCCATTTTTGTTTTCTGACAACTGTTCAAAGATGGCAAGAGGGCCCTGCTGCCCCAATGGTGATAGAAACAAAGGAGCATGGACTCGAGAAGAGGATGACAGGCTTATCCAATACATTCAGGCGCATGGAGAGGGCGGCTGGAACTCTCTCCCCAAGGCCGCAGGTCTGCTTCGGTGTGGCAAAAGTTGCAGGCTGAGATGGATGAATTATCTTCG

Ace file of the UniGene sp_v2.0_unigene42512

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	R2R3-MYB transcription factor MYB10 n=1 Tax=Picea glauca RepID=A5JYF4_PICGL	-	-	9.0e-24	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	r2r3-myb transcription factor myb10	-	-	6.14468e-35	83%

Source	InterPros	Term	Type	Identity
Sma3	Ketose-bisphosphate aldolase, class-II	IPR000771	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3	Myb-related protein P, C-terminal	IPR010588	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTK0

Fln msg: Distance to subject end: 180 aas, your sequence is shorter than subject: 61 - 242

Fln protein: MARGPCCPNGDRNKGAWTREEDDRLIQYIQAHGEGGWNSLPKAAGLLRCGKSCRLRWMNYL

Protein Length: 62

Fln nts: ATGGGGGCACCCATTTTTGTTTTCTGACAACTGTTCAAAG_-_ATGGCAAGAGGGCCCTGCTGCCCCAATGGTGATAGAAACAAAGGAGCATGGACTCGAGAAGAGGATGACAGGCTTATCCAATACATTCAGGCGCATGGAGAGGGCGGCTGGAACTCTCTCCCCAAGGCCGCAGGTCTGCTTCGGTGTGGCAAAAGTTGCAGGCTGAGATGGATGAATTATCTTCG

Fln Alignment:

AllPineV4_c39943___MARGPCCPNGDRNKGAWTREEDDRLIQYIQAHGEGGWNSLPKAAGLLRCGKSCRLRWMNYL
A9NTK0_______________MGRGPCCANGDRNKGAWTREEDDRLIQYIQAHGEGCWRSLPNASGLLRCGKSCRLRWINYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain