SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene42488

Length: 542 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene42488
TAGGCATCTTGGTATTGGTTATCTACAAAGAGATGTCTTTCGTCGTAACCTTAGCAGCACTCAAGGTGTGCACACATTTGGACCAAGAATCTTGATTGATTTGATGAAGTCAGTATGCAATAGAGGGGATGATTTAAGAAATTTGGGCTTGAACTGGATAGGTTCCTGGCTTGTTGCTCTTTATGAATGTTTGAGCCACCAACCCACTGAACATGAGTCCTTTTTCCAGGTAAACTCAGAACCTGATTTCTTTAGTGATCTTGCTCAAATTCGCTTTATTCCTCTTTGTGATGGATCATATAGTTCAGTTAGAGAAGATTCTATCTGGTTACCCTGTGAAGGAACTCGTTCTGGAGTTGATGGTACATATATTTTAAAGAACTTCCCTAAGTTATATTGTGAGCTAAGAACTGTACACCCTTCTCTCCTACTCTGCCCGGCAGACGGAGATGCTGTGATCAGAGGTGATTCAGATGTGATTGTACACATGCTTCGTCGTGTTGGTGTTGGTCAGCTGTCAGCGCATGAAGTTGTGATGAAAC

Ace file of the UniGene sp_v2.0_unigene42488 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	38%
Blast2go	histidine kinase- dna gyrase b- and hsp90-like atpase family protein	-	-	2.16975e-32	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development	GO:0009790	Biological Process	2.16975e-32	55%
Blast2go	cell fate specification	GO:0001708	Biological Process	2.16975e-32	55%
Blast2go	stem cell maintenance	GO:0019827	Biological Process	2.16975e-32	55%
Blast2go	auxin polar transport	GO:0009926	Biological Process	2.16975e-32	55%
Blast2go	leaf vascular tissue pattern formation	GO:0010305	Biological Process	2.16975e-32	55%
Blast2go	root development	GO:0048364	Biological Process	2.16975e-32	55%
Blast2go	nucleus	GO:0005634	Cellular Component	2.16975e-32	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6GWI8

Fln msg: Distance to subject end: 268 aas, your sequence is shorter than subject: 180 - 807

Fln protein: RHLGIGYLQRDVFRRNLSSTQGVHTFGPRILIDLMKSVCNRGDDLRNLGLNWIGSWLVALYECLSHQPTEHESFFQVNSEPDFFSDLAQIRFIPLCDGSYSSVREDSIWLPCEGTRSGVDGTYILKNFPKLYCELRTVHPSLLLCPADGDAVIRGDSDVIVHMLRRVGVGQLSAHEVVMK

Protein Length: 181

Fln nts: TAGGCATCTTGGTATTGGTTATCTACAAAGAGATGTCTTTCGTCGTAACCTTAGCAGCACTCAAGGTGTGCACACATTTGGACCAAGAATCTTGATTGATTTGATGAAGTCAGTATGCAATAGAGGGGATGATTTAAGAAATTTGGGCTTGAACTGGATAGGTTCCTGGCTTGTTGCTCTTTATGAATGTTTGAGCCACCAACCCACTGAACATGAGTCCTTTTTCCAGGTAAACTCAGAACCTGATTTCTTTAGTGATCTTGCTCAAATTCGCTTTATTCCTCTTTGTGATGGATCATATAGTTCAGTTAGAGAAGATTCTATCTGGTTACCCTGTGAAGGAACTCGTTCTGGAGTTGATGGTACATATATTTTAAAGAACTTCCCTAAGTTATATTGTGAGCTAAGAACTGTACACCCTTCTCTCCTACTCTGCCCGGCAGACGGAGATGCTGTGATCAGAGGTGATTCAGATGTGATTGTACACATGCTTCGTCGTGTTGGTGTTGGTCAGCTGTCAGCGCATGAAGTTGTGATGAAAC

Fln Alignment:

AllPineV4_c39910___RHLGIGYLQRDVFRRN-LSSTQGVHTFGPRILIDLMKSVCNRGDDLRNLGLNWIGSWLVALYECLSHQPTEHESFFQVNSEPDFFSDLAQIRFIPLCDGSYSSVREDSIWLPCEGTRSGVDGTYILKNFPKLYCELRTVHPSLL-LCPADGDAVIRGDSDVIVHMLRRVGVGQLSAHEVV
F6GWI8_______________KHLGLGFLDKNIHLSDPLARALGIQEYGPKILLQIISSLCHTEDGLKSMGLAWLSSWLNALYTMPLHY--SGQSSLNSNMESDLIYDLKKIPFIPLSDGNYGSLDEGTIWLHSDSLSTELDGEHGLGAFPNLYAKLRIVNPALLSAASVDIPCMDMTLAENVTRMLLRIGVQQLSAHEIV

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
297	66		33		0.997452
361		66	33		0.997452
363			33	66	0.997452
364	66			33	0.997453
365	66		33		0.997453
367		33	66		0.997452
371	66	33			0.997452
375	66		33		0.997452
377		66		33	0.997452
380		33	66		0.997452
385		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain