SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene42407

Length: 402 nt

UniGene Fasta

>sp_v2.0_unigene42407
GTTAAGCCTCAACGCTGGGCTCATCCCATTTGCAAATCGGAATCTTGCCACAAGAACACTGTATCAATCTGAAAAGCATTCAAGGCAAGCAATAGGATACTATGCAACAAATCGACGTGGAAGATGTGACACTACTGCGCATCAGTTATTTTATCCTCAGAAACCTTTGTTTAAGACTATGTCGTCTGAATGCGTCAATAACATGCACTTCTATAATGGTCAAAATGCAGTAGTCGCTGTTAATGTTCACTATGGATATAACCAGGAAGACTCTCTGGTGACTAACCACGCTTCAATAGACCGTGGACTGTTCCGATCGATGCATTTTCATAGCTTCGTATCTGAGACAGAGCATGACGAGAATCGGTTTAACAATGCTTCTTCATCAAGACTCGAAGTAGA

Ace file of the UniGene sp_v2.0_unigene42407

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI	-	-	78%
FL-Next	Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b	-	-	56%
Blast2go	dna-directed rna polymerase d subunit 2a-like	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	gene silencing	GO:0016458	Biological Process	71%
Blast2go	protein binding	GO:0005515	Molecular Function	71%
Blast2go	DNA-directed RNA polymerase V complex	GO:0000419	Cellular Component	71%
Blast2go	membrane	GO:0016020	Cellular Component	71%
Blast2go		GO:0000420	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	DNA-directed RNA polymerase, subunit 2, domain 6	IPR007120	-	-
Sma3	RNA polymerase, beta subunit, conserved site	IPR007121	-	-
Sma3	RNA polymerase Rpb2, domain 7	IPR007641	-	-
Sma3	RNA polymerase Rpb2, domain 2	IPR007642	-	-
Sma3	RNA polymerase, beta subunit, protrusion	IPR007644	-	-
Sma3	RNA polymerase Rpb2, domain 3	IPR007645	-	-
Sma3	RNA polymerase Rpb2, domain 4	IPR007646	-	-
Sma3	RNA polymerase Rpb2, domain 5	IPR007647	-	-
Sma3	RNA polymerase Rpb2, OB-fold	IPR014724	-	-
Sma3	DNA-directed RNA polymerase, subunit 2	IPR015712	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LV32-2

Fln msg: Distance to subject end: 343 aas, your sequence is shorter than subject: 133 - 1055

Fln protein: LSLNAGLIPFANRNLATRTLYQSEKHSRQAIGYYATNRRGRCDTTAHQLFYPQKPLFKTMSSECVNNMHFYNGQNAVVAVNVHYGYNQEDSLVTNHASIDRGLFRSMHFHSFVSETEHDENRFNNASSSRLEV

Protein Length: 134

Fln nts: GTTAAGCCTCAACGCTGGGCTCATCCCATTTGCAAATCGGAATCTTGCCACAAGAACACTGTATCAATCTGAAAAGCATTCAAGGCAAGCAATAGGATACTATGCAACAAATCGACGTGGAAGATGTGACACTACTGCGCATCAGTTATTTTATCCTCAGAAACCTTTGTTTAAGACTATGTCGTCTGAATGCGTCAATAACATGCACTTCTATAATGGTCAAAATGCAGTAGTCGCTGTTAATGTTCACTATGGATATAACCAGGAAGACTCTCTGGTGACTAACCACGCTTCAATAGACCGTGGACTGTTCCGATCGATGCATTTTCATAGCTTCGTATCTGAGACAGAGCATGACGAGAATCGGTTTAACAATGCTTCTTCATCAAGACTCGAAGTAGA

Fln Alignment:

AllPineV4_c39800___LSLNAGLIPFANRNLATRTLYQSEKHSRQAIGYYATNRRGRCDTTAHQLFYPQKPLFKTMSSECVNNMHFYNGQNAVVAVNVHYGYNQEDSLVTNHASIDRGLFRSMHFHSFVSETE
Q9LV32-2_____________LGVSCAIVPFANHDHGKRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLEKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain