SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene42186

Length: 528 nt

UniGene Fasta

>sp_v2.0_unigene42186
CCCATGGATCGGATGATTCTCCCATACAATCAGCAGCCACCCTCGTTTACATGGAAAAATCGTCAGATTCTACTGTACAGAAATTTGAAGGGGCTCTATTGAATGCTCTGGTATTTGTCCTCATCATAACGGTGGTCACTTTTCTTCTTGTATTACTTTACTATTACCGTTGTATCAGGTTTCTGAAGGGTTACATGTGTGCCTCTGCATCTTTAGTCCTGGCATACATGGGAGGATCCGTTTTTGTTCTTATAATTCAGACCTGGTCAATACCTGTGGATGTCATCTCCTTCTCAATACTTCTTTTCAATTTCACCGTGGTGGGTGTCCTTTCAACTTTTGCGGCCGGGATGCCGATTGTTATCACACAGTTTTATATGGTGTTATTGGGTATATTTGTGGCTTACTGGTTTACTTTGCTCCCTGAATGGACTACTTGGGTGCTTTTGGTTGCTTTGGCGGTTTATGATTTGGTGGCAGTTTTGGCTCCAGGCGGTCCTCTGAATTTGCTGGTAGATCTTGCCACAA

Ace file of the UniGene sp_v2.0_unigene42186

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative presenilin [Arabidopsis thaliana]	-	-	2.0e-38	49%
FL-Next	sp=Presenilin-like protein At1g08700; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	63%
Blast2go	presenilin-like protein at1g08700-like	-	-	0.0	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Inorganic diphosphatase.	EC:3.6.1.1	-	0.0	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Oxidative phosphorylation	00190		0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	pollen development	GO:0009555	Biological Process	77%
Blast2go	protein tetramerization	GO:0051262	Biological Process	77%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	77%
Blast2go	inorganic diphosphatase activity	GO:0004427	Molecular Function	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase A22A, presenilin	IPR001108	-	0.0	-
Sma3	Peptidase A22, presenilin signal peptide	IPR006639	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O64668

Fln msg: Distance to subject end: 244 aas, your sequence is shorter than subject: 175 - 453

Fln protein: HGSDDSPIQSAATLVYMEKSSDSTVQKFEGALLNALVFVLIITVVTFLLVLLYYYRCIRFLKGYMCASASLVLAYMGGSVFVLIIQTWSIPVDVISFSILLFNFTVVGVLSTFAAGMPIVITQFYMVLLGIFVAYWFTLLPEWTTWVLLVALAVYDLVAVLAPGGPLNLLVDLAT

Protein Length: 176

Fln nts: CCCATGGATCGGATGATTCTCCCATACAATCAGCAGCCACCCTCGTTTACATGGAAAAATCGTCAGATTCTACTGTACAGAAATTTGAAGGGGCTCTATTGAATGCTCTGGTATTTGTCCTCATCATAACGGTGGTCACTTTTCTTCTTGTATTACTTTACTATTACCGTTGTATCAGGTTTCTGAAGGGTTACATGTGTGCCTCTGCATCTTTAGTCCTGGCATACATGGGAGGATCCGTTTTTGTTCTTATAATTCAGACCTGGTCAATACCTGTGGATGTCATCTCCTTCTCAATACTTCTTTTCAATTTCACCGTGGTGGGTGTCCTTTCAACTTTTGCGGCCGGGATGCCGATTGTTATCACACAGTTTTATATGGTGTTATTGGGTATATTTGTGGCTTACTGGTTTACTTTGCTCCCTGAATGGACTACTTGGGTGCTTTTGGTTGCTTTGGCGGTTTATGATTTGGTGGCAGTTTTGGCTCCAGGCGGTCCTCTGAATTTGCTGGTAGATCTTGCCACAA

Fln Alignment:

AllPineV4_c39479___SDDSPIQSAATLVYMEKSSDSTVQKFEGALLNAXXXXXXXXXXXXXXXXXYYYRCIRFLKGYMCASASLVLAYMGGSVFVLIIQTWSIPVDVISFSILLFNFTVVGVLSTFAAGMPIVITQFYMVLLGIFVAYWFTLLPEWTTWXXXXXXXXXXXXXXXXPGGPLNLLVDLAT
O64668_______________TSDPQIRSAANLIYIENPSDSTTVKLEGSLANAIVFVVLIAAVTFILVLLFYYNFTNFLKHYMRFSAFFVLGTMGGAIFLSIIQHFSIPVDSITCFILLFNFTILGTLSVFAGGIPIVLRQCYMVVMGIVVAAWFTKLPEWTTWFILVALALYDLVAVLAPGGPLKLLVELAS

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
131		33	66		0.997471
134		33	66		0.997476
137		66	33		0.997464
154		33		66	0.997452
156	66	33			0.997452
157	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain