SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene42176

Length: 450 nt

UniGene Fasta

>sp_v2.0_unigene42176
ACAGGCCTGGATCGATTATGATCATCCTCAAAGTCTCCTCAATGTTACCATCACGATCGCTGGCTTGCCGAGACCGCAGAGACCACTGATGTCTCGGAAAATCGATCTGCGCAACGTTCTGCGGGAGAAGATGTTCGTTGGCTTTTCGGCGGCGACAGGGATTTACATGGAAGACCATTACGTTATGGCGTGGAGCTTCACCACCGAAGGTGAGGCGCCTCCCCTCGATGTGTCGTGTCTCTCTTCATTTGCCAACATGTATTCGGAACGTCTGAGCCGGGGAGTCATAGCTGGCGTTGTTGTGGCCGCTCTGATTCTCTTCTCGCTGGCGATTGTGATGGCCGTGTTTCTGAAAAGAGCAATAAACAGGGAAACGATCGAAGAATGGGAGAAGGAATACTGGCCCCATAGATTCGCTTACAAGGAGCTCAGCATCGCCACGATTGGGTT

Ace file of the UniGene sp_v2.0_unigene42176

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os07g0575600 protein n=2 Tax=Oryza sativa RepID=Q8LIP2_ORYSJ	-	-	2.0e-25	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	receptor-type protein kinase lrk1	-	-	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVC0

Fln msg: Distance to subject end: 282 aas, your sequence is shorter than subject: 149 - 636

Fln protein: QAWIDYDHPQSLLNVTITIAGLPRPQRPLMSRKIDLRNVLREKMFVGFSAATGIYMEDHYVMAWSFTTEGEAPPLDVSCLSSFANMYSERLSRGVIAGVVVAALILFSLAIVMAVFLKRAINRETIEEWEKEYWPHRFAYKELSIATIG

Protein Length: 150

Fln nts: ACAGGCCTGGATCGATTATGATCATCCTCAAAGTCTCCTCAATGTTACCATCACGATCGCTGGCTTGCCGAGACCGCAGAGACCACTGATGTCTCGGAAAATCGATCTGCGCAACGTTCTGCGGGAGAAGATGTTCGTTGGCTTTTCGGCGGCGACAGGGATTTACATGGAAGACCATTACGTTATGGCGTGGAGCTTCACCACCGAAGGTGAGGCGCCTCCCCTCGATGTGTCGTGTCTCTCTTCATTTGCCAACATGTATTCGGAACGTCTGAGCCGGGGAGTCATAGCTGGCGTTGTTGTGGCCGCTCTGATTCTCTTCTCGCTGGCGATTGTGATGGCCGTGTTTCTGAAAAGAGCAATAAACAGGGAAACGATCGAAGAATGGGAGAAGGAATACTGGCCCCATAGATTCGCTTACAAGGAGCTCAGCATCGCCACGATTGGGTT

Fln Alignment:

AllPineV4_c39468___QAWIDYDHPQSLLNVTITIAGLPRPQRPLMSRKIDLRNVLREKMFVGFSAATGIYMEDHYVMAWSFTTEGEAPPLDVSCLSSFANMYSERLSRXXXXXXXXXXXXXFSLAIVMAVFLKRAINRETIEEWEKEYWPHRFAYKELSIAT
A9NVC0_______________QAWIDYDHLQSRLDVTMTVVGLPRPQKPLISLQIDLHNVLQEKMYVGFSAATGLFMEDHYVLAWSFTTQGTAPPLDVSCLRSFANMYTEPLSRGFTVGVTVASLVLFLLAIAAAVFLKRVIKRETIEEWEEEYWPHRFTYKELSIAT

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
272		66	33		0.997476
281	33		66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain