SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene42164

Length: 471 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene42164
GCAAAGTAAGGAAGTGAGTTGCAAATCTCGTAATTGCAGGCCTAATAAACTCTTTGCCCCCAATGTTTTTCCTCATTAGGCTCATGAGTGGTTGTAAATGTATTTTGTAATGCACTTGGCATGCTCTACAATGTTTTTTACTCACTCCACTTTGCCTATGTCCTCAAGCATGAGGACTATGCAATGTGCAGCACATGGAGTCCAAAATATGGTCTTATATTTGGACTCAAGCATCTTTCCAGCAAGAACATAGTTTGAGGCATTATCTGTGAGAACCTACACAACATTCTGCTCCCCCACTCCCTAAAGAATGTCATCCAAAAGCTCAAATAGAAGGGTTGCATCCTTCACCTTATCAGATGCATCAAATGATCTCAAAAACATGGTTCCTTGAGGGAAAGAAACAAGGAAAATAATGATAGTGTGGTTCTTTCCATTTGACATGATGGAACAACCAGTTTTGAGCCCCAT

Ace file of the UniGene sp_v2.0_unigene42164 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF659 domain containing protein	-	-	7.9874e-44	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	PREDICTED: uncharacterized protein LOC100788932 [Glycine max]	-	-	9.43057e-36	70%

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Photosystem I PsaA/PsaB	IPR001280	-	-
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3		IPR011523	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3		IPR015706	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB70

Fln msg: Distance to subject end: 43 aas, your sequence is shorter than subject: 53 - 93

Fln protein: MSSKSSNRRVASFTLSDASNDLKNMVP*GKETRKIMIVWFFPFDMMEQPVLSP

Protein Length: 54

Fln nts: GCAAAGTAAGGAAGTGAGTTGCAAATCTCGTAATTGCAGGCCTAATAAACTCTTTGCCCCCAATGTTTTTCCTCATTAGGCTCATGAGTGGTTGTAAATGTATTTTGTAATGCACTTGGCATGCTCTACAATGTTTTTTACTCACTCCACTTTGCCTATGTCCTCAAGCATGAGGACTATGCAATGTGCAGCACATGGAGTCCAAAATATGGTCTTATATTTGGACTCAAGCATCTTTCCAGCAAGAACATAGTTTGAGGCATTATCTGTGAGAACCTACACAACATTCTGCTCCCCCACTCCCTAAAGA_-_ATGTCATCCAAAAGCTCAAATAGAAGGGTTGCATCCTTCACCTTATCAGATGCATCAAATGATCTCAAAAACATGGTTCCTTGAGGGAAAGAAACAAGGAAAATAATGATAGTGTGGTTCTTTCCATTTGACATGATGGAACAACCAGTTTTGAGCCCCAT

Fln Alignment:

AllPineV4_c39452___ASFTLSDASNDLKNMVP*GKETRKIMIVWFF----PFDMMEQPVLS
D5AB70_______________ASLTLSDASTDLKNMVPCGQETRKFMIVRFFPSLHPSDMMVHPVLA

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
278		33		66	0.997452
279			66	33	0.997452
282		66		33	0.997476
285		66		33	0.997452
297	33	33		33	0.997751
331	66		33		0.997464
333			33	66	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain