SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene42117

Length: 156 nt

UniGene Fasta

>sp_v2.0_unigene42117
ATGGGCATCTATGGAAAGAGTGGGTCTGGGTATCCAAGACAGTCCATTCAACCACTGGGTTCCACAGGCAATTATATATCATCTTTAGATCAAGCTGGAGGACTGGAACACGCACAAAATGGAAATGTTCGAATAGGACCTGAGGTAATGAACATT

Ace file of the UniGene sp_v2.0_unigene42117

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	unknown [Picea sitchensis]	-	-	1.2318e-13	76%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRH8

Fln msg: Distance to subject end: 331 aas, your sequence is shorter than subject: 52 - 970

Fln protein: MGIYGKSGSGYPRQSIQPLGSTGNYISSLDQAGGLEHAQNGNVRIGPEVMNI

Protein Length: 53

Fln nts: ATGGGCATCTATGGAAAGAGTGGGTCTGGGTATCCAAGACAGTCCATTCAACCACTGGGTTCCACAGGCAATTATATATCATCTTTAGATCAAGCTGGAGGACTGGAACACGCACAAAATGGAAATGTTCGAATAGGACCTGAGGTAATGAACATT

Fln Alignment:

AllPineV4_c39390___KSGSGYPRQSIQPLGSTGNYISSLDQAGGLEHAQNGNVRIGPEVMNI
B8LRH8_______________KSGSGIPRQSIQPLGPTDNYMPWLAQAGGLEHPQNGNAGIGSEVMRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain