SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene42029

Length: 221 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene42029
TGTGTTTGTCAGGTGCTAAAGTGGTCTTTTCAACTGTATCATCATCTGGAAAGAACTGCATGAACTTGGCAACACCATTTGACTGTTTGATTATTGATGAGGCGGCCCAGCTCAAAGAGGCCGAATCCACAATTGCACTACAGATTAGAGGTGTAAAACATGCATTTCTGATTGGAGATCCAAAGCAGCTACCGGCAACAGTAATCAGCAAGCTTGCGGAG

Ace file of the UniGene sp_v2.0_unigene42029

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA helicase domain-containing protein [Arabidopsis thaliana] gb\|AEE34425.1\| DNA helicase domain-containing protein [Arabidopsis thaliana]	-	-	1.0e-13	54%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	58%
Blast2go	dna helicase domain-containing protein	-	-	2.61383e-17	69%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	UvrD-like Helicase, ATP-binding domain	IPR014016	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9P516

Fln msg: Distance to subject end: 401 aas, your sequence is shorter than subject: 73 - 1079

Fln protein: CLSGAKVVFSTVSSSGKNCMNLATPFDCLIIDEAAQLKEAESTIALQIRGVKHAFLIGDPKQLPATVISKLAE

Protein Length: 74

Fln nts: TGTGTTTGTCAGGTGCTAAAGTGGTCTTTTCAACTGTATCATCATCTGGAAAGAACTGCATGAACTTGGCAACACCATTTGACTGTTTGATTATTGATGAGGCGGCCCAGCTCAAAGAGGCCGAATCCACAATTGCACTACAGATTAGAGGTGTAAAACATGCATTTCTGATTGGAGATCCAAAGCAGCTACCGGCAACAGTAATCAGCAAGCTTGCGGAG

Fln Alignment:

AllPineV4_c39280___CLSGAKVVFSTVSSSGKNCMNLATPFDCLIIDEAAQLKEAESTIALQIRGVKHAFLIGDPKQLPATVISKLAE
B9P516_______________CLGNACLVFCTASSSAKLHTERAKPIKLLVIDEAAQLKECESTIPLQLSGLRHAILIGDERQLPAMVQSKISE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
121		66	33		0.997454
122		66	33		0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain