SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene41803

Length: 544 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene41803
AGACTCTCCGTCGATTACGGCAAGAAGTCCAAGCTCGGCTTCACCATCTATCCCTCTCCCCAAGTCTCCACTGCCGTCGTTTGAACCTTACAACTCCGTCTTGTCCACTCACTCCCTTTTGGAACACACTGACGTCGCTGTTATGCTCGATAACGAAGCTATCTACGATATCTGCAGAAGACAACTCGACATCGAAAGACCCACTTACACCAACTTGAACAGACTTATCGCTCAAGTCATCTCCTCTTTGACTGCCTCTTTGAGATTCGATGGTGCCCTCAACGTCGATATCACTGAATTCCAAACCAACTTGGTCCCCTACCCCAGAATCCATTTCATGTTGTCCTCTTATGCCCCCATCATCTCCGCTGAAAAGGCCTATCACGAACAACTCTCCGTTGCTGAAATCACCAACTCTGCCTTCGAACCTGCCTCCATGATGGTTAAGTGCGATCCCAGACATGGTAAATACATGGCCTGCTGCATGATGTACAGAGGTGATGTCGTCCCCAAGGATGTCAACGCTTCCATTGGCACCATCAAG

Ace file of the UniGene sp_v2.0_unigene41803

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin alpha chain n=1 Tax=Euplotes vannus RepID=TBA_EUPVA	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	alpha-tubulin	-	-	97%

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQU1

Fln msg: Separated hits, possible frame ERROR between 81 and 83, Distance to subject end: 114 aas, your sequence is shorter than subject: 182 - 450

Fln protein: RLSVDYGKKSKLGFTIYPSPQVSTAVxxEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRQLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPASMMVKCDPRHGKYMACCMMYRGDVVPKDVNASIGTIK

Protein Length: 183

Fln nts: AGACTCTCCGTCGATTACGGCAAGAAGTCCAAGCTCGGCTTCACCATCTATCCCTCTCCCCAAGTCTCCACTGCCGTCGTxxxTGAACCTTACAACTCCGTCTTGTCCACTCACTCCCTtTTGGAACACACTGAcGTCGCTGTTATGCTCGATAACGAAGCTATCTAtGATATCTGCAGAAGACAACTCGACATCGAAAGACCCACTTACACCAACTTGAACAGACTcATCGCTCAAGTCATCTCCTCTTTGACTGCCTCTTTGAGATTCGATGGTGCCCTCAACGTCGATATCACTGAATTCCAAACCAACTTGGTCCCCTACCCCAGAATCCATTTCATGTTGTCCTCTTATGCCCCCATCATCTCCGCTGAAAAGGCCTATCACGAACAACTCTCCGTTGCTGAAATCACCAACTCTGCCTTCGAACCTGCCTCCATGATGGTTAAGTGCGATCCCAGACATGGTAAATACATGGCCTGCTGCATGATGTACAGAGGTGATGTCGTCCCCAAGGATGTCAACGCTTCCATTGGCACCATCAAG

Fln Alignment:

AllPineV4_c38994___RLSVDYGKKSKLGFTIYPSPQVSTAVVxEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRQLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPASMMVKCDPRHGKYMACCMMYRGDVVPKDVNASIGTIK
C0PQU1_______________RLSVDYGKKSKLGFTVYPSPQVSTSVVxEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain