SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene41689

Length: 411 nt

UniGene Fasta

>sp_v2.0_unigene41689
GGTTTGCATGATCCCGCGGGACGTTTGGCTTCTTGGAATGTTTCTTTCAGCTGTTGCCAGTGGGATGGTGTCTCCTGCGACAGCCGAACCGGTTCTGTAGTTGCGTTGGATTTGCAAAATTGCGGTTTGAGCGGCATCTTGCGCCCTGCTGCACTGTTTAACTTGACGGCCTTGGAGCATTTAGATGTCAGCTTCAATAACTTCGCTGGTCTACCTATTCCTAAAGAGATGGGGCTTTTGCACGACTTGAAATACCTCAACCTGTCCACAGCTGGATTTGCAGGTACCGTTCCATGGCAGCTCGGAAATCTGAATAACTTGACAGGACTCGATCTCTCTTCCCCTGTTTCTGAGTTGAAAAGTCCGGACCTCTCATGGCTTGCTAAACTCACGGCCTTGACAAATCTTTCT

Ace file of the UniGene sp_v2.0_unigene41689

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_22.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7T299_VITVI	-	-	5.0e-23	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	lrr receptor-like serine threonine-protein kinase fls2-like	-	-	7.04279e-27	62%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMF2

Fln msg: Distance to subject end: 574 aas, your sequence is shorter than subject: 137 - 754

Fln protein: GLHDPAGRLASWNVSFSCCQWDGVSCDSRTGSVVALDLQNCGLSGILRPAALFNLTALEHLDVSFNNFAGLPIPKEMGLLHDLKYLNLSTAGFAGTVPWQLGNLNNLTGLDLSSPVSELKSPDLSWLAKLTALTNLS

Protein Length: 138

Fln nts: GGTTTGCATGATCCCGCGGGACGTTTGGCTTCTTGGAATGTTTCTTTCAGCTGTTGCCAGTGGGATGGTGTCTCCTGCGACAGCCGAACCGGTTCTGTAGTTGCGTTGGATTTGCAAAATTGCGGTTTGAGCGGCATCTTGCGCCCTGCTGCACTGTTTAACTTGACGGCCTTGGAGCATTTAGATGTCAGCTTCAATAACTTCGCTGGTCTACCTATTCCTAAAGAGATGGGGCTTTTGCACGACTTGAAATACCTCAACCTGTCCACAGCTGGATTTGCAGGTACCGTTCCATGGCAGCTCGGAAATCTGAATAACTTGACAGGACTCGATCTCTCTTCCCCTGTTTCTGAGTTGAAAAGTCCtGACCTCTCATGGCTTGCTAAACTCACGGCCTTGACAAATCTTTCT

Fln Alignment:

AllPineV4_c38836___DPAGRLASWNVSFSC-CQWDGVSCDSRTGSVVALDLQNCGLSGILRPAALFNLTALEHLDVSFNNFAGLPIPKEMGLLHDLKYLNLSTAGFAGTVP
B8LMF2_______________DPYNAFSNWNPDDEDPCKWRGVSCVD--GNVVSLELVDLSLQGILAPE-LGQLIHLQKLVLCKNNFSG-SIPKELGELGNLELLNLSHNGLIGKIP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain