SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene41653

Length: 471 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene41653
CGTCGTGACCTTGGCTGTTGTGGAGGGGTAGCATTATTCGAAGTGGGGAGCAGGAGCAGGAGCAGTACCAGGTGACATGGGGGAAGAAATGTATGGAAAACATGAGAAGAAAAAAGAGGGAGAGCTGTATGCTCTCCTACACATATCGCCTCAAGCTTCAGATGAAGAAATCAGAAAAGCGTATCGACAGTGGGCACAGATTTATCATCCAGACAAGTATCAGAGTCTCCAGATGAAAGACATTGCCACAGAGAACTTTCAAAAAATACGTGAAGCATATGAAATTTTGAGTGATGCACACAAGAGGCAAATTTATGATATCTATGGTATGGAAGGTTTAACATCAGGTTTGGAGCTTGGTCAAAGACTGAAAACACCTGAAGAGATAAGGGAGGAGTTTGAGAGGGTGAAACAACGGCGAGAGGAGGAGAAATTTGCAGCTCATGTGCGGCCTTCGGGGTCTTTTCTGGC

Ace file of the UniGene sp_v2.0_unigene41653

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Os10g0507800 protein (Fragment) n=3 Tax=Oryza sativa RepID=Q0IWI3_ORYSJ	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	chaperone protein dnaj 13	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	85%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3		IPR015609	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN93

Fln msg: Distance to subject end: 64 aas, your sequence is shorter than subject: 131 - 182

Fln protein: MGEEMYGKHEKKKEGELYALLHISPQASDEEIRKAYRQWAQIYHPDKYQSLQMKDIATENFQKIREAYEILSDAHKRQIYDIYGMEGLTSGLELGQRLKTPEEIREEFERVKQRREEEKFAAHVRPSGSFL

Protein Length: 132

Fln nts: CGTCGTGACCTTGGCTGTTGTGGAGGGGTAGCATTATTCGAAGTGGGGAGCAGGAGCAGGAGCAGTACCAGGTGAC_-_ATGGGGGAAGAAATGTATGGAAAACATGAGAAGAAAAAAGAGGGAGAGCTGTATGCTCTCCTACACATATCGCCTCAAGCTTCAGATGAAGAAATCAGAAAAGCGTATCGACAGTGGGCACAGATTTATCATCCAGACAAGTATCAGAGTCTCCAGATGAAAGACATTGCCACAGAGAACTTTCAAAAAATACGTGAAGCATATGAAATTTTGAGTGATGCACACAAGAGGCAAATTTATGATATCTATGGTATGGAAGGTTTAACATCAGGTTTGGAGCTTGGTCAAAGACTGAAAACACCTGAAGAGATAAGGGAGGAGTTTGAGAGGGTGAAACAACGGCGAGAGGAGGAGAAATTTGCAGCTCATGTGCGGCCTTCGGGGTCTTTTCTGGC

Fln Alignment:

AllPineV4_c38785___ELYALLHISPQASDEEIRKAYRQWAQIYHPDKYQSLQMKDIATENFQKIREAYEILSDAHKRQIYDIYGMEGL
B8LN93_______________DYYIILNVGRRASEDDLKKAYRKLAMKWHPDKNPN--NKKEAEAKFKQISEAYEVLSDPQKRAIYDQYGEEGL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
256			80	20	0.995493
261		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
47	65	GGAGCA GGAGCA GGAGCA G	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain