SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene41639

Length: 652 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene41639

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	gag-pol polyprotein	-	-	57%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Glycoside hydrolase, family 35	IPR001944	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3		IPR013084	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
208		75	25		0.996473
210	75		25		0.996473
211	33	33		33	0.997753
236	33		66		1.0
266		75		25	0.996473
269		33		66	1.0
280		25	75		0.996473
310	20		80		0.995493
311		50		50	1.0
322	66		33		1.0
328		16		83	0.994512
329	83	16			0.994512
330		16	83		0.994512
334		80		20	0.995493
335	25		50	25	0.995533
350	80	20			0.995493
385	20		80		0.995493
389		50		50	1.0
404	50		50		1.0
416	66		33		0.997452
420	25		75		0.996478
475	33	66			0.997452
486	66	33			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain