SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene41514

Length: 330 nt

UniGene Fasta

>sp_v2.0_unigene41514
AATGACACAGCTGAGGCGACTAGACAGCAGTATGCTGGAACTGTGGCTGCTGTGAATGCTTTGGAGGTGAAAATATCCCAATTATCTGATGACGAATTGAGAGCCAAAACTGCAGAGTTCAAAGAAAGACTGGTTCGTGGAGAGTCACTGGATTCACTTCTACCGGAAGCATTTGCAGTTGTTCGGGAAGCTTCCAAAAGAATATTGGGTCTTCGTCCTTTCGACATGCAGTTGATAGGAGGTATGGTTCTCCATAAGGGAGAAATTGCAGAAATGAGGACAGGAGAAGGCAAAACGTTGGTTGCAGTTTTACCTGCTTACTTGAATGCT

Ace file of the UniGene sp_v2.0_unigene41514

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to Protein translocase subunit secA, chloroplastic n=1 Tax=Vitis vinifera RepID=UPI0001983A2B	-	-	9.99995e-41	78%
FL-Next	sp=Protein translocase subunit SecA, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	77%
Blast2go	protein translocase subunit chloroplastic-like	-	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	response to absence of light	GO:0009646	Biological Process	85%
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	85%
Blast2go	regulation of photosynthesis	GO:0010109	Biological Process	85%
Blast2go	chloroplast organization	GO:0009658	Biological Process	85%
Blast2go	protein transport	GO:0015031	Biological Process	85%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	SecA protein	IPR000185	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	SecA DEAD-like, N-terminal	IPR011115	-	-
Sma3	SecA Wing/Scaffold	IPR011116	-	-
Sma3	SecA preprotein, cross-linking domain	IPR011130	-	-
Sma3	SecA motor DEAD	IPR014018	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SYI0

Fln msg: Distance to subject end: 828 aas, your sequence is shorter than subject: 110 - 1022

Fln protein: NDTAEATRQQYAGTVAAVNALEVKISQLSDDELRAKTAEFKERLVRGESLDSLLPEAFAVVREASKRILGLRPFDMQLIGGMVLHKGEIAEMRTGEGKTLVAVLPAYLNA

Protein Length: 111

Fln nts: AATGACACAGCTGAGGCGACTAGACAGCAGTATGCTGGAACTGTGGCTGCTGTGAATGCTTTGGAGGTGAAAATATCCCAATTATCTGATGACGAATTGAGAGCCAAAACTGCAGAGTTCAAAGAAAGACTGGTTCGTGGAGAGTCACTGGATTCACTTCTACcGGAAGCATTTGCAGTTGTTCGGGAAGCTTCCAAAAGAATATTGGGTCTTCGTCCTTTCGACATGCAGTTGATAGGAGGTATGGTTCTCCATAAGGGAGAAATTGCAGAAATGAGGACAGGAGAAGGCAAAACGTTGGTTGCAGTTTTACCTGCTTACTTGAATGCT

Fln Alignment:

AllPineV4_c38588___NDTAEATRQQYAGTVAAVNALEVKISQLSDDELRAKTAEFKERLVRGESLDSLLPEAFAVVREASKRILGLRPFDMQLIGGMVLHKGEIAEMRTGEGKTLVAVLPAYLNA
Q9SYI0_______________SDNGESTRQQYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain