SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene41273

Length: 228 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene41273
ATGGGGAATGGAAATGGAAGGAGCTAATCAACACGATGGCGGGTCGCAGATGCCCACGCAAACTGACGATGATCGAAACAAAGCTCCACGCATTCACATGATCCGCGCGGTTCAGCATTTGATCGAGAGATGTCTGCTTTTTCAAATGGATCTCCACGACTGCGTCGAAACCCTAGAAAAGCATGCCAAAATCCACCCCGCCCTCACCATCGCAGTTTGGAGGGGTTT

Ace file of the UniGene sp_v2.0_unigene41273

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	A_thal_3526 domain containing protein	-	-	1.0e-10	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	unknown [Picea sitchensis]	-	-	5.72748e-22	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	developmental process	GO:0032502	Biological Process	5.72748e-22	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Conserved hypothetical protein CHP01589, plant	IPR006476	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXT8

Fln msg: Distance to subject end: 58 aas, your sequence is shorter than subject: 73 - 131

Fln protein: MEMEGANQHDGGSQMPTQTDDDRNKAPRIHMIRAVQHLIERCLLFQMDLHDCVETLEKHAKIHPALTIAVWRG

Protein Length: 74

Fln nts: ATGGGGA_-_ATGGAAATGGAAGGAGCTAATCAACACGATGGCGGGTCGCAGATGCCCACGCAAACTGACGATGATCGAAACAAAGCTCCACGCATTCACATGATCCGCGCGGTTCAGCATTTGATCGAGAGATGTCTGCTTTTTCAAATGGATCTCCACGACTGCGTCGAAACCCTAGAAAAGCATGCCAAAATCCACCCCGCCCTCACCATCGCAGTTTGGAGGGGTTT

Fln Alignment:

AllPineV4_c38265___MEMEGANQHDGGSQMPTQTDDDRNKAPRIHMIRAVQHLIERCLLFQMDLHDCVETLEKHAKIHPALTIAVWRG
A9NXT8_______________MRIQRTNRIDRGLIL-MQTHDDRNEDQRVHMIRTVQHLIERCLLFHMDLPGCVETLAKRANIDPVLTIAVWKG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
24		66	33		0.997456
25			33	66	0.997456

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain