SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene41217

Length: 242 nt

Origin of reads: Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene41217
AGGGTCCCAAGTATGTGAAGACGAGGGAGGAGATTCTGGAGAGCCTCTTACGAGGGAGGAAGTCAGGCATCTCGTCGACAGCAGTTGCCACACCAACCGTCAGCTTAATATTGGTAGGGATGGTTTAACTCACAATATGTTGGAGAATATTCATCATCATTGGAAACGGAGGCGTGTTTGTAAGATAAAGTGCAAAGGGGTTGCAACAGTTGATATGGATAATGTTTGCCATCAACTACAGG

Ace file of the UniGene sp_v2.0_unigene41217 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CRS2-associated factor 1, chloroplastic precursor [Zea mays] sp\|Q84N49.1\|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor gb\|AAP	-	-	4.0e-26	76%
FL-Next	sp=CRS2-associated factor 1, chloroplastic; Zea mays (Maize).	-	-	0.0	76%
Blast2go	crs2-associated factor 1	-	-	9.21957e-31	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	Group II intron splicing	GO:0000373	Biological Process	9.21957e-31	83%
Blast2go	intracellular part	GO:0044424	Cellular Component	9.21957e-31	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA-binding, CRM domain	IPR001890	-	0.0	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q84N49

Fln msg: Distance to subject end: 425 aas, your sequence is shorter than subject: 80 - 674

Fln protein: GSQVCEDEGGDSGEPLTREEVRHLVDSSCHTNRQLNIGRDGLTHNMLENIHHHWKRRRVCKIKCKGVATVDMDNVCHQLQ

Protein Length: 81

Fln nts: AGGGTCCCAAGTATGTGAAGACGAGGGAGGAGATTCTGGAGAGCCTCTTACGAGGGAGGAAGTCAGGCATCTCGTCGACAGCAGTTGCCACACCAACCGTCAGCTTAATATTGGTAGGGATGGTTTAACTCACAATATGTTGGAGAATATTCATCATCATTGGAAACGGAGGCGTGTTTGTAAGATAAAGTGCAAAGGGGTTGCAACAGTTGATATGGATAATGTTTGCCATCAACTACAGG

Fln Alignment:

AllPineV4_c38190___GEPLTREEVRHLVDSSCHTNRQLNIGRDGLTHNMLENIHHHWKRRRVCKIKCKGVATVDMDNVCHQLQ
Q84N49_______________GEPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNICHQLE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
13			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain