SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene41182

Length: 407 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene41182
CGTCGTGACCTTGGCTGTCACTCAAGTGTTGCTATGCCCTAGATATGCTGACAAAAAAAATAGTTGGGTCAAACAAGGGGAGGTCGCTACTATCTTCACACATCATCAGAAGACAGTGCTTGTTGATTCAGAAGCTGTAGGCAGCAGAAGAAAGATTACAGCATTTCTTGGTGGACTTGATCTTTGTGATGGACGTTATGATACTCCAGAGCACCATTTGTTTCGAACTCTAGGAACTGTTCACAAGGATGACTATCGCAACCGATCTTTTACGGCAGGTATGGATTTTGGTGGGCCAAGAGAGCCATGGCATGACCTATATTGTAAAATTGACGGTCCTGCGGCATATGATGTCCTCACAAATTTTGAGCAGCGGTGGACTAAGGCAGCAGAGCGACATGGATTTA

Ace file of the UniGene sp_v2.0_unigene41182

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phospholipase D n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M5R2_ARALL	-	-	72%
FL-Next	sp=Phospholipase D; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	phospholipase d	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phospholipase D.	EC:3.1.4.4	-	0.0	82%

Source	KEGGs	Term	Identity
Blast2go	Glycerophospholipid metabolism	00564	82%
Blast2go	Ether lipid metabolism	00565	82%
Blast2go	Metabolic pathways	01100	82%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	82%
Blast2go	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	phospholipase D activity	GO:0004630	Molecular Function	82%
Blast2go	phosphatidylinositol-4,5-bisphosphate binding	GO:0005546	Molecular Function	82%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Phospholipase D/Transphosphatidylase	IPR001736	-	-
Sma3	YLP motif	IPR004019	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	Phospholipase D, plant	IPR011402	-	-
Sma3	Phospholipase D	IPR015679	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ49

Fln msg: Distance to subject end: 398 aas, your sequence is shorter than subject: 135 - 861

Fln protein: VVTLAVTQVLLCPRYADKKNSWVKQGEVATIFTHHQKTVLVDSEAVGSRRKITAFLGGLDLCDGRYDTPEHHLFRTLGTVHKDDYRNRSFTAGMDFGGPREPWHDLYCKIDGPAAYDVLTNFEQRWTKAAERHGF

Protein Length: 136

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTGTTGCTATGCCCTAGATATGCTGACAAAAAAAATAGTTGGGTCAAACAAGGGGAGGTCGCTACTATCTTCACACATCATCAGAAGACAGTGCTTGTTGATTCAGAAGCTGTAGGCAGCAGAAGAAAGATTACAGCATTTCTTGGTGGACTTGATCTTTGTGATGGACGTTATGATACTCCAGAGCACCATTTGTTTCGAACTCTAGGAACTGTTCACAAGGATGACTATCGCAACCGATCTTTTACGGCAGGTATGGATTTTGGTGGGCCAAGAGAGCCATGGCATGACCTATATTGTAAAATTGACGGTCCTGCGGCATATGATGTCCTCACAAATTTTGAGCAGCGGTGGACTAAGGCAGCAGAGCGACATGGATTTA

Fln Alignment:

AllPineV4_c38145___QVLLCPRYADKKNSWVKQGEVATIFTHHQKTVLVDSEAVGSRRKITAFLGGLDLCDGRYDTPEHHLFRTLGTVHKDDYRNRSFTAGMDFGGPREPWHDLYCKIDGPAAYDVLTNFEQRWTKAAERHGF
B8LQ49_______________QCVLAPRYASTKLSWFKQQVVGTLYTHHQKNVIVDSQAQGNYRKLTAFIGGLDLCDGRYDTPEHRLFKGLETVYEEDYHNPTFTTNADAHGPRQPWHDLHSKIEGPAAYDILTNFEQRWRKATKLHRF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain