SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene41165

Length: 553 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene41165
AAGCACTTGATTTTTATGGCGCACTCAGATCTCGCACATATGATCGGTTTGTCCTAAAGTGGGTGGAAGAAATTGGAGGTGCTGAAAAACTCGGGGAGAAATTACTGAGGAGGCAAAAGGGTGCTCCACTTCCCACATTCATACCACCGAAGCAAAAGATTGAAGATCTCATGGACGCAGGGTATTCTCTTGTCGAGGAACAAGAAATGGTTATGAGAATGAGACTTTCTGAGGAATACATGAAGAATTAAAAGCACTACTATGTACATTGTCTATATTTTGATGAGAACTTCTCTAAAGCTAGCTTTGGGATGTGATAAAATGGGTATGTGCATGGGCCACCTTTGTCTACAATGTAGGGTAAATTAAATTTAACCAAGTTTTATTGTAGTTTGTGTTGTTTGAATACCTGTTAAACTAAGTAAGATTATTCATTTGAATTGGAAGTCATGTCAGTGTGACTATCTTGATTAGTTTGTTCAAACATAACAAATTTATTTAGTTTAAACGGTTTGTATATTTAAAAAGTTGTGATTTACAAAAGTAAGTGTAC

Ace file of the UniGene sp_v2.0_unigene41165 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative RuBisCo activase protein [Zantedeschia hybrid cultivar]	-	-	8.0e-26	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	ribulose bisphosphate carboxylase oxygenase chloroplastic-like	-	-	6.65878e-31	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	6.65878e-31	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, AAA-type, core	IPR003959	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXN4

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 18 aas, your sequence is shorter than subject: 83 - 310

Fln protein: ALDFYGALRSRTYDRFVLKWVEEIGGAEKLGEKLLRRQKGAPLPTFIPPKQKIEDLMDAGYSLVEEQEMVMRMRLSEEYMKN*

Protein Length: 84

Fln nts: AAGCACTTGATTTTTATGGCGCACTCAGATCTCGCACATATGATCGGTTTGTCCTAAAGTGGGTGGAAGAAATTGGAGGTGCTGAAAAACTCGGGGAGAAATTACTGAGGAGGCAAAAGGGTGCTCCACTTCCCACATTCATACCACCGAAGCAAAAGATTGAAGATCTCATGGACGCAGGGTATTCTCTTGTCGAGGAACAAGAAATGGTTATGAGAATGAGACTTTCTGAGGAATACATGAAGAATTAA___AAGCACTACTATGTACATTGTCTATATTTTGATGAGAACTTCTCTAAAGCTAGCTTTGGGATGTGATAAAATGGGTATGTGCATGGGCCACCTTTGTCTACAATGTAGGGTAAATTAAATTTAACCAAGTTTTATTGTAGTTTGTGTTGTTTGAATACCTGTTAAACTAAGTAAGATTATTCATTTGAATTGGAAGTCATGTCAGTGTGACTATCTTGATTAGTTTGTTCAAACATAACAAATTTATTTAGTTTAAACGGTTTGTATATTTAAAAAGTTGTGATTTACAAAAGTAAGTGTAC

Fln Alignment:

AllPineV4_c38123___ALDFYGALRSRTYDRFVLKWVEEIGGAEKLGEKLLRRQKGAPLPTFIPPKQKIEDLMDAGYSLVEEQEMVMRMRLSEEYM
A9NXN4_______________SIDFFGALRARVYDDEVRKWVAGTG-IQNIGKKLINSKEGPP--TFEKPAMTIEKLLEYGNMLVGEQDNVKRLQLADKYM

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
384	33		66		0.997452
388	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain