SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene41059

Length: 292 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene41059
CGTCGTGACCTTGGCTGTCACTCAATATAGACAGGTTGAGAGGGTCTTTGCAGACAGAACAACAAAGATTGATTCTGACAATGAGGTCCAGGAATATCTAGTTAAGTGGAAGGGGCTCTCATTTGCTGAAGCAACCTGGGAGAAGGACATAGACATTGCTTTTGCTCAAGATGCTATTGATGAATATAAGAGTCGTGAAGCTGCGATGACAATTCAAGGAAAGACGGTTGATGCCCAAAGAAAGAAAAGCAAAGCAAGTTTGCGTAAACTTGATGAACAACCTGAATGGTTG

Ace file of the UniGene sp_v2.0_unigene41059

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	chromatin remodeling 5 [Arabidopsis thaliana] gb\|AEC06230.1\| chromatin remodeling 5 [Arabidopsis thaliana]	-	-	6.0e-22	56%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	73%
Blast2go	chromodomain-helicase-dna-binding protein 2-like	-	-	4.56641e-31	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	4.56641e-31	81%

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	SNF2-related	IPR000330	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9FUP1

Fln msg: Distance to subject end: 1142 aas, your sequence is shorter than subject: 97 - 1734

Fln protein: VVTLAVTQYRQVERVFADRTTKIDSDNEVQEYLVKWKGLSFAEATWEKDIDIAFAQDAIDEYKSREAAMTIQGKTVDAQRKKSKASLRKLDEQPEWL

Protein Length: 98

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATAGACAGGTTGAGAGGGTCTTTGCAGACAGAACAACAAAGATTGATTCTGACAATGAGGTCCAGGAATATCTAGTTAAGTGGAAGGGGCTCTCATTTGCTGAAGCAACCTGGGAGAAGGACATAGACATTGCTTTTGCTCAAGATGCTATTGATGAATATAAGAGTCGTGAAGCTGCGATGACAATTCAAGGAAAGACGGTTGATGCCCAAAGAAAGAAAAGCAAAGCAAGTTTGCGTAAACTTGATGAACAACCTGAATGGTTG

Fln Alignment:

AllPineV4_c37968___VTQYRQVERVFADRTTKIDSDNEVQEYLVKWKGLSFAEATWEKXXXXXXXXXXXXEYKSREAAMTIQGKTVDAQRKKSKASLRKLDEQPEWL
B9FUP1_______________IKQYSQVERIFADRVSKVDGDDLVPEYLVKWQGLPYAESTWEKDTDIEFAQDAIDEYKAREAATSILGKTVDFQRKKSKASLRRLDDQPEWL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain