SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene41003

Length: 389 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene41003
ACCGAAGAGAGGTGGAGAATGCTGAAGCTTACACCTACGATGAAGAGGTTTTAAAGAAGGCAGAGGCCATGGGCGTGGCAGGGCTTGTTAGCATTGTTGCTAAGGAAGATCATTTTGTTTTCAGTGTTGAAACGACCGGTGTACTTACGGCCACCCAGTTGGTTCTTAATGCTATTAGCGTTTTAAGGCAAAAGCTTGATAATGTGCGACCTATGTTGGAAGACGATGAGCAATTTGGTGAATTCAATGCTCATATGAGTGGCTATGCCTTCAAATGAATTGACTTAATTCAGCTGCTTTTAATGTATTATATTAGTAACAGGTTTGAAACTTAAAAACTTGTAAACATGTGTGAAAGGTAATTAGCTGGTTCTTGTAAGTGCTGCGTG

Ace file of the UniGene sp_v2.0_unigene41003

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase II, third largest subunit [Arabidopsis thaliana]	-	-	4.0e-21	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	dna-directed rna polymerase third largest subunit	-	-	1.11544e-28	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	1.11544e-28	76%
Blast2go	cytoplasm	GO:0005737	Cellular Component	1.11544e-28	76%
Blast2go	nucleolus	GO:0005730	Cellular Component	1.11544e-28	76%
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	1.11544e-28	76%
Blast2go	DNA-directed RNA polymerase IV complex	GO:0000418	Cellular Component	1.11544e-28	76%
Blast2go		GO:0080137	Cellular Component	1.11544e-28	76%

Source	InterPros	Term	Type	Identity
Sma3	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	IPR001514	-	-
Sma3	DNA-directed RNA polymerase, dimerisation	IPR011261	-	-
Sma3	DNA-directed RNA polymerase, insert domain	IPR011262	-	-
Sma3	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	IPR011263	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADF1

Fln msg: your sequence is shorter than subject: 92 - 330

Fln protein: RREVENAEAYTYDEEVLKKAEAMGVAGLVSIVAKEDHFVFSVETTGVLTATQLVLNAISVLRQKLDNVRPMLEDDEQFGEFNAHMSGYAFK*

Protein Length: 93

Fln nts: ACCGAAGAGAGGTGGAGAATGCTGAAGCTTACACCTACGATGAAGAGGTTTTAAAGAAGGCAGAGGCCATGGGCGTGGCAGGGCTTGTTAGCATTGTTGCTAAGGAAGATCATTTTGTTTTCAGTGTTGAAACGACCGGTGTACTTACGGCCACCCAGTTGGTTCTTAATGCTATTAGCGTTTTAAGGCAAAAGCTTGATAATGTGCGACCTATGTTGGAAGACGATGAGCAATTTGGTGAATTCAATGCTCATATGAGTGGCTATGCCTTCAAATGA___ATTGACTTAATTCAGCTGCTTTTAATGTATTATATTAGTAACAGGTTTGAAACTTAAAAACTTGTAAACATGTGTGAAAGGTAATTAGCTGGTTCTTGTAAGTGCTGCGTG

Fln Alignment:

AllPineV4_c37885___VENAEAYTYDEEVLKKAEAMGVAGLVSIVAKEDHFVFSVETTGVLTATQLVLNAISVLRQKLDNVR---PMLEDDEQFGEFNAHMSG
D5ADF1_______________VVDAEAYSYDDEVIKKAEAMGKPGLVSINAKDDSFIFTIESTGALKASQMLLNAIDILKQKLETVRLSPETEEDDAQFIDLEQHMRG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain