SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene40943

Length: 420 nt

UniGene Fasta

>sp_v2.0_unigene40943
GCATGGTAACTGGGGACAATCTTATAACAGCAATTTCAATTGCCCGGGATGTGGCATATAATTGCAAAGATGGATTGGCCATAGAGGGTTCTGAGTTCCGCAACTATAGTAACGAAGAATGGTTACAAGCCTGAAAAGCTACAGGTATTGGCTTGTTCACTTCCATCTGACAAGTTGCTATTGGTTCAAAAGCTGAAAGAGAGTAGTGAAGTAGTTGCAGTAACTGGAGACGGGACAAATGATGCACCGGCACTCCATGAGGCCAATATTGGTCTTGCAATGGGTATCTCTGGAACAGAAGTTGCCAAGGAAATCTCTGATGTAATTACCTTGGATGACAACTTTGCTTCAGTGGTCAAGATGATGCGATGGGGACGGTGCAGTTTATGCAAACAATTCAAAAGTTACATACAATTTCAG

Ace file of the UniGene sp_v2.0_unigene40943

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium-transporting ATPase 1 n=1 Tax=Ceratopteris richardii RepID=Q7XBH9_CERRI	-	-	2.0e-33	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	ca2+-transporting atpase	-	-	3.65635e-35	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium-transporting ATPase.	EC:3.6.3.8	-	3.65635e-35	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	single fertilization	GO:0007338	Biological Process	3.65635e-35	82%
Blast2go	transport	GO:0006810	Biological Process	3.65635e-35	82%
Blast2go	pollen development	GO:0009555	Biological Process	3.65635e-35	82%
Blast2go	calcium-transporting ATPase activity	GO:0005388	Molecular Function	3.65635e-35	82%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	3.65635e-35	82%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	3.65635e-35	82%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	3.65635e-35	82%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	3.65635e-35	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.65635e-35	82%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	DNA-repair protein, UmuC-like	IPR001126	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit, eukaryotic	IPR005775	-	-
Sma3	ATPase, P-type, calcium-transporting	IPR005782	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, calcium-transporting, PMCA-type	IPR006408	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	DNA-repair protein, UmuC-like, N-terminal	IPR017963	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEG4

Fln msg: Distance to subject end: 243 aas, atg_distance in limit (1-15): atg_distance = 6, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 112 - 387

Fln protein: RVLSSATIVTKNGYKPEKLQVLACSLPSDKLLLVQKLKESSEVVAVTGDGTNDAPALHEANIGLAMGISGTEVAKEISDVITLDDNFASVVKMMRWGRCSLCKQFKSYIQFQ

Protein Length: 113

Fln nts: GCATGGTAACTGGGGACAATCTTATAACAGCAATTTCAATTGCCCGGGATGTGGCATATAATTGCAAAGATGGATTGGCCATAGAGGGTTCTGAGTTCCGCAACTATAGTAACGAAGAATGGTTACAAGCCTGAAAAGCTACAGGTATTGGCTTGTTCACTTCCATCTGACAAGTTGCTATTGGTTCAAAAGCTGAAAGAGAGTAGTGAAGTAGTTGCAGTAACTGGAGACGGGACAAATGATGCACCGGCACTCCATGAGGCCAATATTGGTCTTGCAATGGGTATCTCTGGAACAGAAGTTGCCAAGGAAATCTCTGATGTAATTACCTTGGATGACAACTTTGCTTCAGTGGTCAAGATGATGCGATGGGGACGGTGCAGTTTATGCAAACAATTCAAAAGTTACATACAATTTCAG

Fln Alignment:

AllPineV4_c37808___EKLQVLACSLPSDKLLLVQKLKESSEVVAVTGDGTNDAPALHEANIGLAMGISGTEVAKEISDVITLDDNFASVVKMMRWGRCSLCKQFKSYIQFQ
D5AEG4_______________DKICVMGRSSPTDKLFLVQALRKKGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGR-SVYANIQKFIQFQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain