SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene40849

Length: 321 nt

UniGene Fasta

>sp_v2.0_unigene40849
TGGAGGTTATTTATCCTCTGTATCATCCGCAGATATATCCTTGGTTGGGGGTTCAACCCATCAAGGGTATTCTATTGCACGGGCCACCAGGATGCGGAAAAACCAAAGCTGGCACATGTCGTAGCTTGGGTGTCGGTCGTTCCTTTCTACAAGATTTCGGCTACTGAAGTGGTTTCTGGAGTCTCAGGTGAGTCAGAGGAGAATATTCGTGCTTTGTTTGCCAAAGCATCAAAAACATCACCCTCCATCATATTTATAGATGAGATTGATGCTATTAGCGCTAAGAGAGAAACATTGCAGAGAGAGATGGAACGTCGTATT

Ace file of the UniGene sp_v2.0_unigene40849

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein cdcH, putative n=1 Tax=Ricinus communis RepID=B9S9N8_RICCO	-	-	6.0e-17	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	cell division control protein 48 homolog c-like	-	-	1.06612e-19	72%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ75

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 341 aas, your sequence is shorter than subject: 55 - 695

Fln protein: EVIYPLYHPQIYPWLGVQPIKGILLHGPPGCGKTKAGTCRSLGVGRSFLQDFGY*

Protein Length: 56

Fln nts: TGGAGGTTATTTATCCTCTGTATCATCCGCAGATATATCCTTGGTTGGGGGTTCAACCCATCAAGGGTATTCTATTGCACGGGCCACCAGGATGCGGAAAAACCAAAGCTGGCACATGTCGTAGCTTGGGTGTCGGTCGTTCCTTTCTACAAGATTTCGGCTACTGAAGTGGTTTCTGGAGTCTCAGGTGAGTCAGAGGAGAATATTCGTGCTTTGTTTGCCAAAGCATCAAAAACATCACCCTCCATCATATTTATAGATGAGATTGATGCTATTAGCGCTAAGAGAGAAACATTGCAGAGAGAGATGGAACGTCGTATT

Fln Alignment:

AllPineV4_c37676___EVIYPLYHPQIYPWLGVQPIKGILLHGPPGCGKT
C0PQ75_______________EVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKT

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
305	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain