SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene40779

Length: 412 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene40779
ATGGGGGCGCACTGGATGGTGTGGTGGGCATGGAAGCGGATGCCCAGCTACTTGCAGAGGCGGTAAAGATTGTTTCAGGAAGCCTATTGGCAGAAAATGACAAATTGAATGTGGATGGTAGAGATTCTGTTGGGAATGATAATGATGGAGATAAAGCAAATCACGAAGAGGAGAAACCAGAGTGGGCTCAAGTGTTGGAACCTGTAAGAAAGCTACCGACAAATGTTGGGACGAGAATCAGAAAATGCGTTTATGAAGCACTTGAGAGAAGTCCACCTGACTGGGCAAAAGAGATTCTAGAATGGTCAATTAGCAAAGAAATTTACAAGGGGAATGCCTCAGGTCCAACAAAGAAAGCTGTTCTGTCCATCTTGGCAAATTCTCTAGTGAAGAACCAGAACAAAGGCCTCGT

Ace file of the UniGene sp_v2.0_unigene40779

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Methyl-CpG-binding domain-containing protein 9 n=2 Tax=Arabidopsis RepID=MBD9_ARATH	-	-	6.99949e-42	67%
FL-Next	sp=Methyl-CpG-binding domain-containing protein 9; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	67%
Blast2go	dna binding	-	-	0.0	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone acetyltransferase.	EC:2.3.1.48	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	histone H4 acetylation	GO:0043967	Biological Process	71%
Blast2go	secondary shoot formation	GO:0010223	Biological Process	71%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	71%
Blast2go	photoperiodism, flowering	GO:0048573	Biological Process	71%
Blast2go	histone H3 acetylation	GO:0043966	Biological Process	71%
Blast2go	histone binding	GO:0042393	Molecular Function	71%
Blast2go	histone acetyltransferase activity	GO:0004402	Molecular Function	71%
Blast2go	nucleus	GO:0005634	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Bromodomain	IPR001487	-	-
Sma3	Methyl-CpG DNA binding	IPR001739	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	FY-rich, N-terminal	IPR003888	-	-
Sma3	FY-rich, C-terminal	IPR003889	-	-
Sma3	DDT domain	IPR004022	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Extracellular solute-binding protein, family 3, conserved site	IPR018313	-	-
Sma3	DDT domain superfamily	IPR018501	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SGH2

Fln msg: Distance to subject end: 1052 aas, your sequence is shorter than subject: 136 - 2176

Fln protein: GGALDGVVGMEADAQLLAEAVKIVSGSLLAENDKLNVDGRDSVGNDNDGDKANHEEEKPEWAQVLEPVRKLPTNVGTRIRKCVYEALERSPPDWAKEILEWSISKEIYKGNASGPTKKAVLSILANSLVKNQNKGL

Protein Length: 137

Fln nts: ATGGGGGCGCACTGGATGGTGTGGTGGGCATGGAAGCGGATGCCCAGCTACTTGCAGAGGCGGTAAAGATTGTTTCAGGAAGCCTATTGGCAGAAAATGACAAATTGAATGTGGATGGTAGAGATTCTGTTGGGAATGATAATGATGGAGATAAAGCAAATCACGAAGAGGAGAAACCAGAGTGGGCTCAAGTGTTGGAACCTGTAAGAAAGCTACCGACAAATGTTGGGACGAGAATCAGAAAATGCGTTTATGAAGCACTTGAGAGAAGTCCACCTGACTGGGCAAAAGAGATTCTAGAATGGTCAATTAGCAAAGAAATTTACAAGGGGAATGCCTCAGGTCCAACAAAGAAAGCTGTTCTGTCCATCTTGGCAAATTCTCTAGTGAAGAACCAGAACAAAGGCCTCGT

Fln Alignment:

AllPineV4_c37585___GALDGVVGMEADAQLLAEAVKIVSGSLLAENDKLNVDGRDSVGNDNDGDKANHEEEKPEWAQVLEPVRKLPTNVGTRIRKCVYEALERSPPDWAKEILEWSISKEIYKGNASGPTKKAVLSILAN----SLVKNQNKG
Q9SGH2_______________GSLTGVAGMEADSMLLAEAIKKISGSLTSENDVLSVEDDDSDGLDAT-ETNTCSGDIPEWAQVLEPVKKLPTNVGTRIRKCVYEALERNPPEWAKKILEHSISKEIYKGNASGPTKKAVLSLLADIRGGDLVQRSIKG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
186			66	33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain