SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene40691

Length: 194 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene40691
GCAAGGCATGATTCTATCTCATTGTACACATGTTTGGAGGCTTTCTTACGGGAAGAGCCATTAGTGCCTGAAGAGATGTGGTATTGTCCCTGCTGTAAGGAGCATCGCCAGGCTAGCAAAAAGTTGGATTTGTGGAGGTTGCCTGAAGTTCTAGTAGTTCATCTGAAGAGGTTTTTATACAGCCGGTCTATGAA

Ace file of the UniGene sp_v2.0_unigene40691

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ricinus communis RepID=B9SWA7_RICCO	-	-	4.0e-26	85%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	81%
Blast2go	ubiquitin carboxyl-terminal	-	-	1.42402e-32	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	ubiquitin-specific protease activity	GO:0004843	Molecular Function	1.42402e-32	91%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	Crotonase, core	IPR001753	-	-
Sma3	Queuine/other tRNA-ribosyltransferase	IPR002616	-	-
Sma3	Transcription initiation factor TFIID	IPR003228	-	-
Sma3	Queuine tRNA-ribosyltransferase	IPR004803	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Ureohydrolase	IPR006035	-	-
Sma3	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	IPR006615	-	-
Sma3	Histone-fold	IPR009072	-	-
Sma3		IPR010460	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O22207

Fln msg: Distance to subject end: 97 aas, your sequence is shorter than subject: 64 - 924

Fln protein: ARHDSISLYTCLEAFLREEPLVPEEMWYCPCCKEHRQASKKLDLWRLPEVLVVHLKRFLYSRSM

Protein Length: 65

Fln nts: GCAAGGCATGATTCTATCTCATTGTACACATGTTTGGAGGCTTTCTTACGGGAAGAGCCATTAGTGCCTGAAGAGATGTGGTATTGTCCCTGCTGTAAGGAGCATCGCCAGGCTAGCAAAAAGTTGGATTTGTGGAGGTTGCCTGAAGTTCTAGTAGTTCATCTGAAGAGGTTTTTATACAGCCGGTCTATGAA

Fln Alignment:

AllPineV4_c37458___ARHDSISLYTCLEAFLREEPLVPEEMWYCPCCKEHRQASKKLDLWRLPEVLVVHLKRFLYSRSM
O22207_______________ARSEPLSLYACLEAFLREEPLVPDEMWFCPQCNERRQASKKLDLWRLPEVLVIHLKRFSYSRSM

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
40	33		66		0.997457
41	33	66			0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain