SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene40549

Length: 307 nt

UniGene Fasta

>sp_v2.0_unigene40549
AGAAAAGAAAGAACTGTCCAAAGTCACAATGGTGGTTTGACTGTCCTTTAAGCTTGCATCTGTCTCAACCTGTCGCAAGGAGTGGTTCATCCCTCCAGCCATTCCTCCGGGCTTTGTAACTCGACACAAGTTTTCAGTTCCTCTAGAGGTTGAACGCAATTTTTTTCAGCTGCCCGCCCCAGAGGCATCTCCTCCACATGACTCAGAGCTGTGCATGATGATTGAGGGCCTTGCAACTTTTGTGGCAAGAAGTGGTAAAATATTTGAAGATCTCTCCAGAGAGAAGAACGCAAACAATCCGTTATTT

Ace file of the UniGene sp_v2.0_unigene40549

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	G patch domain-containing protein 1 [Arabidopsis thaliana] dbj\|BAC42755.1\| unknown protein [Arabidopsis thaliana] gb\|AAP40415.1\| unknown protein [Arabidopsis thaliana] gb\|AED93116.1\| G patch domain-containing protein 1 [Arabidopsis thaliana]	-	-	1.0e-16	54%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	53%
Blast2go	g patch domain-containing protein 1	-	-	6.50317e-20	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	auxin polar transport	GO:0009926	Biological Process	6.50317e-20	60%
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	6.50317e-20	60%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	6.50317e-20	60%
Blast2go	protein binding	GO:0005515	Molecular Function	6.50317e-20	60%
Blast2go	nucleus	GO:0005634	Cellular Component	6.50317e-20	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	SWAP/Surp	IPR000061	-	0.0	-
Sma3	Domain of unknown function DUF1604	IPR011666	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9I2N4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 521 aas, your sequence is shorter than subject: 102 - 965

Fln protein: EKKELSKVTMVV*LSFKLASVSTCRKEWFIPPAIPPGFVTRHKFSVPLEVERNFFQLPAPEASPPHDSELCMMIEGLATFVARSGKIFEDLSREKNANNPLF

Protein Length: 103

Fln nts: AGAAAAGAAAGAACTGTCCAAAGTCACAATGGTGGTTTGACTGTCCTTTAAGCTTGCATCTGTCTCAACCTGTCGCAAGGAGTGGTTCATCCCTCCAGCCATTCCTCCGGGCTTTGTAACTCGACACAAGTTTTCAGTTCCTCTAGAGGTTGAACGCAATTTTTTTCAGCTGCCCGCCCCAGAGGCATCTCCTCCACATGACTCAGAGCTGTGCATGATGATTGAGGGCCTTGCAACTTTTGTGGCAAGAAGTGGTAAAATATTTGAAGATCTCTCCAGAGAGAAGAACGCAAACAATCCGTTATTT

Fln Alignment:

AllPineV4_c37266___FKLASVSTCRKEWFIPPAIPPGFVTRHKFSVPLEVERNFFQL--PAPEASPPHDSELCMMIEGLATFVARSGKIFEDLSREKNANNPLF
B9I2N4_______________FKVASNSDYQLERFDPPVIPKDFLPHHKFPGPLEFDKKPATLSPPPPEVPPPEDDNSKVLIEGVATLVARCGKLFEDLSREKNQSNPLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain