SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene40255

Length: 578 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene40255
CACTTGCTCTCTCAATCTTGATGAGCATTCATACTTCCAGAAGGCTCTCTCCTTGAGACAAAAAATAGACATTCTTGGGGCTCTTAAAGCTGCAGGTATTAAACCAGATGGAAGGGAATACAGTTTGAAAGATATCAAGAAGGCCATTAAGCAAAGCACTGGCGAGCTCCCAGGAATCGATTGCAACACAAGCGATGAGGGAAAGCATCAAATATATCAGGTGTATGTGTGTGTTGATAAATCTGACGCTTCCACTGTTATTGAATGCCCCATTTATCCACACAGCAAATGCCCATCCATGGTTGCGTTTCCACCTTTTGGGGACGATCAGGAGGACCGAGGTGGTTACGCAGACGGAATAGAGGAGCTGTAGATGTGGACAAACAGCATTCTTTCTTCATTTTAATCAATAAAATTTCCGATTTCAGCCGACGTTGTGTAGTTTCGGTGGCTTCTTCAATTGCAGTGCATGTTTTGCACGATTCAATTTGCCCGTATTTACTCTTGCTACGATGAAACAGCCCGATGCTGTCAGGTTTCCAGAGACGCAACATTAGATTTCATTGTTTAAATATGGG

Ace file of the UniGene sp_v2.0_unigene40255

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribonuclease 1 n=2 Tax=Arabidopsis RepID=RNS1_ARATH	-	-	1.0e-26	52%
FL-Next	sp=Ribonuclease 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%
Blast2go	ribonuclease 1	-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	72%
Blast2go	anthocyanin biosynthetic process	GO:0009718	Biological Process	72%
Blast2go	response to wounding	GO:0009611	Biological Process	72%
Blast2go	aging	GO:0007568	Biological Process	72%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	72%
Blast2go	ribonuclease activity	GO:0004540	Molecular Function	72%
Blast2go	cell wall	GO:0005618	Cellular Component	72%
Blast2go	extracellular region	GO:0005576	Cellular Component	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribonuclease T2	IPR001568	-	0.0	-
Sma3	Ribonuclease T2, active site	IPR018188	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P42813

Fln msg: your sequence is shorter than subject: 124 - 230

Fln protein: TCSLNLDEHSYFQKALSLRQKIDILGALKAAGIKPDGREYSLKDIKKAIKQSTGELPGIDCNTSDEGKHQIYQVYVCVDKSDASTVIECPIYPHSKCPSMVAFPPFGDDQEDRGGYADGIEEL*

Protein Length: 125

Fln nts: CACTTGCTCTCTCAATCTTGATGAGCATTCATACTTCCAGAAGGCTCTCTCCTTGAGACAAAAAATAGACATTCTTGGGGCTCTTAAAGCTGCAGGTATTAAACCAGATGGAAGGGAATACAGTTTGAAAGATATCAAGAAGGCCATTAAGCAAAGCACTGGCGAGCTCCCAGGAATCGATTGCAACACAAGCGATGAGGGAAAGCATCAAATATATCAGGTGTATGTGTGTGTTGATAAATCTGACGCTTCCACTGTTATTGAATGCCCCATTTATCCACACAGCAAATGCCCATCCATGGTTGCGTTTCCACCTTTTGGGGACGATCAGGAGGACCGAGGTGGTTACGCAGACGGAATAGAGGAGCTGTAG___ATGTGGACAAACAGCATTCTTTCTTCATTTTAATCAATAAAATTTCCGATTTCAGCCGACGTTGTGTAGTTTCGGTGGCTTCTTCAATTGCAGTGCATGTTTTGCACGATTCAATTTGCCCGTATTTACTCTTGCTACGATGAAACAGCCCGATGCTGTCAGGTTTCCAGAGACGCAACATTAGATTTCATTGTTTAAATATGGG

Fln Alignment:

AllPineV4_c36856___TCSLN-LDEHSYFQKALSLRQKIDILGALKAAGIKPDGREYSLKDIKKAIKQSTGELPGIDCNTSDEGKHQIYQVYVCVDKSDASTVIECPIYPHSKCPSMVAFPPF
P42813_______________TCSESVIDQHEYFQTALNLKQKTNLLGALTKAGINPDGKSYSLESIRDSIKESIGFTPWVECNRDGSGNSQLYQVYLCVDRS-GSGLIECPVFPHGKCGAEIEFPSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain