SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene40231

Length: 320 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene40231
CGTCGTGACCTTGGCTGTCACTCAATGAAAATGGATTGAGCAACAGCGTTATCACGCCGCCTCCTCGTCCTCCTGCAACTGTGAATGTGGGTGCTCTTCTGGCATACAATACCACCATGGGAAGAGTAGCTAAACAGGCTATTGAGATGGCTGTGGAGGACGTTAATAACAGCCCTTCTTTGCTCAATGCAACTCAGTTGTTGCTTACTATGATGGACTCCAATTGCAGTGCCTTCATAGGAACTGCAGCAGCTTTGGAGTTAATCCCCAAGCTTTGCTTTGAGGTTGTGCACATGGGCTTTCTAACTACCAAACTTGAA

Ace file of the UniGene sp_v2.0_unigene40231 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutamate receptor n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S8F0_PHYPA	-	-	4.0e-13	55%
FL-Next	Isoform 2 of Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4	-	-	0.0	44%
Blast2go	glutamate receptor	-	-	2.95427e-15	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular response to acetate	GO:0071311	Biological Process	2.95427e-15	67%
Blast2go	calcium ion transmembrane transport	GO:0070588	Biological Process	2.95427e-15	67%
Blast2go	cellular response to abscisic acid stimulus	GO:0071215	Biological Process	2.95427e-15	67%
Blast2go	response to wounding	GO:0009611	Biological Process	2.95427e-15	67%
Blast2go	cellular response to cold	GO:0070417	Biological Process	2.95427e-15	67%
Blast2go	cellular response to mechanical stimulus	GO:0071260	Biological Process	2.95427e-15	67%
Blast2go	calcium-mediated signaling	GO:0019722	Biological Process	2.95427e-15	67%
Blast2go	calcium channel activity	GO:0005262	Molecular Function	2.95427e-15	67%
Blast2go	glutamate receptor activity	GO:0008066	Molecular Function	2.95427e-15	67%
Blast2go	protein binding	GO:0005515	Molecular Function	2.95427e-15	67%
Blast2go	chloroplast	GO:0009507	Cellular Component	2.95427e-15	67%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.95427e-15	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GXJ4-2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 529 aas, your sequence is shorter than subject: 106 - 669

Fln protein: S*PWLSLNENGLSNSVITPPPRPPATVNVGALLAYNTTMGRVAKQAIEMAVEDVNNSPSLLNATQLLLTMMDSNCSAFIGTAAALELIPKLCFEVVHMGFLTTKLE

Protein Length: 107

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGAAAATGGATTGAGCAACAGCGTTATCACGCCGCCTCCTCGTCCTCCTGCAACTGTGAATGTGGGTGCTCTTCTGGCATACAATACCACCATGGGAAGAGTAGCTAAACAGGCTATTGAGATGGCTGTGGAGGACGTTAATAACAGCCCTTCTTTGCTCAATGCAACTCAGTTGTTGCTTACTATGATGGACTCCAATTGCAGTGCCTTCATAGGAACTGCAGCAGCTTTGGAGTTAATCCCCAAGCTTTGCTTTGAGGTTGTGCACATGGGCTTTCTAACTACCAAACTTGAA

Fln Alignment:

AllPineV4_c36825___SLNENGLSNSVITPPPRPPATVNVGALLAYNTTMGRVAKQAIEMAVEDVNNSPSLLNATQLLLTMMDSNCSAFIGTAAALELI
Q8GXJ4-2_____________SRNSSSSSSSSLRPLRQRPSSVNVGALFTYDSFIGRAAKPAVKAAMDDVNADQSVLKGIKLNIIFQDSNCSGFIGTMGALQLM

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
60	66		33		0.997454
62	33			66	0.997476
65	66		33		0.997471
66	66			33	0.997476
91	66		33		0.997476
209	33		66		0.997452
210		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain