SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene40202

Length: 476 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene40202
ATTTGAACTCGTCAAGCAATGTCCTAACTGGGAGGATTCCTCCCGAGCTTTCATTTATTAAAGGACTTAAGATATTGAATCTGAACACGAATAGCCTAACTGGTAGGATTCCAGAGGAGTTTCATAGTCTCGAGTCTCTACAGGAGCTTCAGCTCTCTGTAAACCGTCTGACCGGTCCTATTCCACAGTGGATCAGCAATTTGACCAGTCTTGAGATCTTCACAGCATACGAGAATTCGTTCAATGGCTCGATACCACAAAATCTTGGTTTGAATTCCAACCTGGAAGTGCTGAATCTCCATTCAAATAAGCTTGTTGGAAGCATTCCCGAGAGCATTTTTGCATCTGGGCAGCTTCAAGTTCTTATTTTAACTATGAATAGTTTAGATGGTAGCCTTCCTCGGTCTGTAGGCAAATGCAAAGGCTTGTCCAATCTTCGCATAGGAAGCAATAAGCTTACAGGAAGCATACCTCCA

Ace file of the UniGene sp_v2.0_unigene40202 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative LRR receptor-like kinase 2 [Oryza sativa Japonica Group]	-	-	6.0e-39	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRM4

Fln msg: Distance to subject end: 611 aas, your sequence is shorter than subject: 158 - 907

Fln protein: LNSSSNVLTGRIPPELSFIKGLKILNLNTNSLTGRIPEEFHSLESLQELQLSVNRLTGPIPQWISNLTSLEIFTAYENSFNGSIPQNLGLNSNLEVLNLHSNKLVGSIPESIFASGQLQVLILTMNSLDGSLPRSVGKCKGLSNLRIGSNKLTGSIPP

Protein Length: 159

Fln nts: ATTTGAACTCGTCAAGCAATGTCCTAACTGGGAGGATTCCTCCCGAGCTTTCATTTATTAAAGGACTTAAGATATTGAATCTGAACACGAATAGCCTAACTGGTAGGATTCCAGAGGAGTTTCATAGTCTCGAGTCTCTACAGGAGCTTCAGCTCTCTGTAAACCGTCTGACCGGTCCTATTCCACAGTGGATCAGCAATTTGACCAGTCTTGAGATCTTCACAGCATACGAGAATTCGTTCAATGGCTCGATACCACAAAATCTTGGTTTGAATTCCAACCTGGAAGTGCTGAATCTCCATTCAAATAAGCTTGTTGGAAGCATTCCCGAGAGCATTTTTGCATCTGGGCAGCTTCAAGTTCTTATTTTAACTATGAATAGTTTAGATGGTAGCCTTCCTCGGTCTGTAGGCAAATGCAAAGGCTTGTCCAATCTTCGCATAGGAAGCAATAAGCTTACAGGAAGCATACCTCCA

Fln Alignment:

AllPineV4_c36787___LNSSSNVLTGRIPPELSFIKGLKILNLNTNSLTGRIPEEFHXXXXXXXXXXSVNRLTGPIPQWISNLTSLEIFTAYENSFNGSIPQNLGLNSNLEVLNLHSNKLVGSIPESIFASGQLQVLILTMNSLDGSLPRSVGKCKGLSNLRIGSNKLTGSIPP
B8LRM4_______________LNLSSNALTGRIPPELSSIKGLKILNLNTNGLNGGIPEEFHRLESLQELQLSVNHLTGPIPQWISNLTSLEIFTAYENSFNGAIPQNLGLNSNLEVLNLHSNKLVGSIPESIFASGQLQVLILTMNSLDGSLPRSVGKCRGLSNLRIGSNKLTGSIPP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain