SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene40156

Length: 238 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene40156
GCAAGTCCTGAATGTTCTCTGGTTCAGAATGTAACAGTGTTTAGAGCCCATAGAGAAAAAGTGGAGAGCAACGTTGTACGAACTGTGCTTATCGTATGGTTATTTGTTATTTTAATCATCACTTCAAGTTATACTGCATCTCTGACCTCAATTCTCACGGTACAACAGCTTTCACCAACAATGAAAGGTATCGACAGTTTGAGAGGAAGCAACATACCAATAGGATATCCAGCAGGAT

Ace file of the UniGene sp_v2.0_unigene40156

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutamate receptor (Fragment) n=2 Tax=Vitis vinifera RepID=D7SWB7_VITVI	-	-	2.0e-09	54%
FL-Next	sp=Glutamate receptor 3.7; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%
Blast2go	glutamate receptor	-	-	1.63448e-11	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	calcium ion transmembrane transport	GO:0070588	Biological Process	1.63448e-11	78%
Blast2go	gravitropism	GO:0009630	Biological Process	1.63448e-11	78%
Blast2go	calcium channel activity	GO:0005262	Molecular Function	1.63448e-11	78%
Blast2go	glutamate receptor activity	GO:0008066	Molecular Function	1.63448e-11	78%
Blast2go	protein binding	GO:0005515	Molecular Function	1.63448e-11	78%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, family 3	IPR000337	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Extracellular solute-binding protein, family 3	IPR001638	-	-
Sma3	Extracellular ligand-binding receptor	IPR001828	-	-
Sma3	GPCR, family 3, gamma-aminobutyric acid receptor, type B	IPR002455	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3		IPR015683	-	-
Sma3	Ionotropic glutamate receptor, plant	IPR017103	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SDQ4

Fln msg: Distance to subject end: 229 aas, your sequence is shorter than subject: 79 - 921

Fln protein: ASPECSLVQNVTVFRAHREKVESNVVRTVLIVWLFVILIITSSYTASLTSILTVQQLSPTMKGIDSLRGSNIPIGYPAG

Protein Length: 80

Fln nts: GCAAGTCCTGAATGTTCTCTGGTTCAGAATGTAACAGTGTTTAGAGCCCATAGAGAAAAAGTGGAGAGCAACGTTGTACGAACTGTGCTTATCGTATGGTTATTTGTTATTTTAATCATCACTTCAAGTTATACTGCATCTCTGACCTCAATTCTCACGGTACAACAGCTTTCACCAACAATGAAAGGTATCGACAGTTTGAGAGGAAGCAACATACCAATAGGATATCCAGCAGGAT

Fln Alignment:

AllPineV4_c36717___TVFRAHREKVESNVVRTXXXXXXXXXXXXTSSYTASLTSILTVQQLSPTMKGIDSLRGSNIPIGYPAG
Q9SDQ4_______________TLFKRNQEDTISNLARLVMIVWLFLLMVLTASYTANLTSILTVQQLPSAITGIDSLRASEVPIGYQAG

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
28	66	33			0.997452
29	66			33	0.997452
31		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain