SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene40141

Length: 570 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene40141
CGTCGTGACCTTGGCTGTCACTCATCGTGACCTTGCATGTCAATCATTTCAACAATCCACGATCAACCTTTGCAGAAAATTATATTGTGACACTTGCCCTCGTCTACTGTGTGGTGGGAATTGCATATATCTTTGCCATCGCTCTTGATCCAGGATCAGCTCAACTTTGTTCTGTACTTATTCCCGTTGTTTCAACACTGATAGCAACTCAACCAAATTCAAATGGTATTTTGAAGTATCTTAACGACTCAACTTATGCAAGCTGGCTTCTCGAGGCATATGTGGTAGCGAACGCAAAAAGATATTCTGGTGTGTGGATGATATCTCGTTGTGGCATACTGCTGAGAAAAGGCTACCGTGTAGATTACTGGGTTCGTTGTATCAGCGTTCTTATTGGCTTTGGAGCATTAGCTCGGATGATTGCTTTTAGCTGTTTGATTTTCCTTAATCGAAAAAGACAAAGGTGATTTGTAAATCAAATTGAGGATAAAGGTGATGTGTAAATCAAATTGAGGAAAGGGTTGTACAGGTTTATTTGGGATATATAATTAGTAAATTTATTTATTTAAT

Ace file of the UniGene sp_v2.0_unigene40141 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter n=2 Tax=Selaginella moellendorffii RepID=D8RGY6_SELML	-	-	1.00053e-42	58%
FL-Next	sp=Putative white-brown complex homolog protein 30; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%
Blast2go	abc transporter g family member 28-like	-	-	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	Sodium:dicarboxylate symporter, conserved site	IPR018107	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SJK6

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 155 - 1063

Fln protein: S*PWLSLIVTLHVNHFNNPRSTFAENYIVTLALVYCVVGIAYIFAIALDPGSAQLCSVLIPVVSTLIATQPNSNGILKYLNDSTYASWLLEAYVVANAKRYSGVWMISRCGILLRKGYRVDYWVRCISVLIGFGALARMIAFSCLIFLNRKRQR*

Protein Length: 156

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCGTGACCTTGCATGTCAATCATTTCAACAATCCACGATCAACCTTTGCAGAAAATTATATTGTGACACTTGCCCTCGTCTACTGTGTGGTGGGAATTGCATATATCTTTGCCATCGCTCTTGATCCAGGATCAGCTCAACTTTGTTCTGTACTTATTCCCGTTGTTTCAACACTGATAGCAACTCAACCAAATTCAAATGGTATTTTGAAGTATCTTAACGACTCAACTTATGCAAGCTGGCTTCTCGAGGCATATGTGGTAGCGAACGCAAAAAGATATTCTGGTGTGTGGATGATATCTCGTTGTGGCATACTGCTGAGAAAAGGCTACCGTGTAGATTACTGGGTTCGTTGTATCAGCGTTCTTATTGGCTTTGGAGCATTAGCTCGGATGATTGCTTTTAGCTGTTTGATTTTCCTTAATCGAAAAAGACAAAGGTGA___TTTGTAAATCAAATTGAGGATAAAGGTGATGTGTAAATCAAATTGAGGAAAGGGTTGTACAGGTTTATTTGGGATATATAATTAGTAAATTTATTTATTTAAT

Fln Alignment:

AllPineV4_c36692___FNNPRSTFAENYIVTLALVYCVVGIAYIFAIALDPGSAQLCSVLIPVVSTLIATQPNSNGILKYLNDSTYASWLLEAYVVANAKRYSGVWMISRCGILLRKGYRVDYWVRCISVLIGFGALARMIAFSCLIFLNRK
Q9SJK6_______________FNNPRSSFEDNYIVLVCLVYCVTGMAYIFAILYSPSAAQLLSVLVPVVMTLIANQDKESMVLKYLGSFCYPKWTLEAFVLSNAQRYSGVWVVTRCSSLSQNGYDLSDWILCLIVLVLMGLICRFIAYFCMVTFQKK

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
276	14		85		0.993536
328	16			83	0.994512
345		14		85	0.993533
346	66			33	1.0
347		71	28		1.0
348	28	71			1.0
349	71		28		1.0
351			28	71	1.0
352	28			71	1.0
353		28	71		1.0
356	71	28			1.0
357		28		71	1.0
358	28			71	1.0
359	28			71	1.0
363		28		71	1.0
364	28		71		1.0
365	71	28			1.0
367	28			71	1.0
368		28		71	1.0
371		25		75	0.996473
390			60	40	1.0
393	60		40		1.0
404	60	40			1.0
408	60		40		1.0
411		40		60	1.0
412	40		60		1.0
413	60	40			1.0
415	40	60			1.0
416		40		60	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
3	15	TAAA TAAA TAAA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain