SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene39913

Length: 376 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene39913
AATGTATACCTCGAGTTAAGATACTGCTCAGAAATGGTGTTGTTCCTGATTCCTTCGGTACCTTAAAAACCTCCAGCATATCGATTTGTCTGGTGCTTTGAGTTTGCAGATGCTTCCAAACTCATTTGGGAATTTAACTCGACTCAAGCATCTAGTGTTGAGAGGTTGCTGCAGTTTGGTCATCTCCAATGGGGCATTTGGAAATATCACCACCCTGGAACACATAGATCTTTCAGGTTGTAGCAATGTGAAAGAATTGCCTTCCCAAATCCCATATCAACGGTCCTTGAAAACATTAGATGTGTGTAAAACGAAGTTATCAAACTTGCCAAGCAGTATTGGAGAGATATGCAAATTGGAAGCTCTGGAATTAGGA

Ace file of the UniGene sp_v2.0_unigene39913

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS6_PINMO	-	-	5.0e-17	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	tir-nbs-lrr class disease resistance protein	-	-	5.07885e-24	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	5.07885e-24	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMZ7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 282 aas, your sequence is shorter than subject: 125 - 618

Fln protein: MYTSS*DTAQKWCCS*FLRYLKNLQHIDLSGALSLQMLPNSFGNLTRLKHLVLRGCCSLVISNGAFGNITTLEHIDLSGCSNVKELPSQIPYQRSLKTLDVCKTKLSNLPSSIGEICKLEALELG

Protein Length: 126

Fln nts: AATGTATACCTCGAGTTAAGATACTGCTCAGAAATGGTGTTGTTCCTGATTCCTTCGGTACCTTAAAAACCTCCAGCATATCGATTTGTCTGGTGCTTTGAGTTTGCAGATGCTTCCAAACTCATTTGGGAATTTAACTCGACTCAAGCATCTAGTGTTGAGAGGTTGCTGCAGTTTGGTCATCTCCAATGGGGCATTTGGAAATATCACCACCCTGGAACACATAGATCTTTCAGGTTGTAGCAATGTGAAAGAATTGCCTTCCCAAATCCCATATCAACGGTCCTTGAAAACATTAGATGTGTGTAAAACGAAGTTATCAAACTTGCCAAGCAGTATTGGAGAGATATGCAAATTGGAAGCTCTGGAATTAGGA

Fln Alignment:

AllPineV4_c36378___YLKNLQHIDLSGALSLQMLPNSFGNLTRLKHLVLRGCCSLVISNGAFGNITTLEHIDLSGCSNVKELPSQIPYQRSLKTLDVCKTKLSNLPSSIGEICKLEALELG
B8LMZ7_______________YLTNLQHLNLSRCRSLQGFPNSFRNLIRLKYLNLEYCSDLTMSEETFANISTLEYLNLSDCKSVQVLPRQLAHQPSLEILSLSETNLKELPGDIGNLSSLEELSLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain