SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene39895

Length: 324 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene39895
ACATGGGGACTACTTCAAATGCATGAGTAGAAATTATTGCATCGTGCCAGGGGCAGAACATTATGCTTGTATGGTTGATCTTCTTGGTCGCAGTGGGAATCTGGACGAGGCTCAAGATTTCATCCTCAGTATGCCGATACAACCGACCGCTGATGTCTGGGGGGCCTTACTTGGTGCATGCAGAATTCACTGTAATGTTGTGCTCGCAGAATGTGCGGCAAAGTACCTGTTTGATCTCAATCCCCAAAATGCGGGATATTATGTTCTTTTGTCAAACACATATGCTGCTGCAAGTAGATGGGATGATGCAGCGAAGGTGAGAAC

Ace file of the UniGene sp_v2.0_unigene39895

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tetratricopeptide-like helical [Medicago truncatula]	-	-	8.0e-30	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	pentatricopeptide repeat-containing protein chloroplastic-like	-	-	8.12753e-44	75%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Distance to subject end: 145 aas, your sequence is shorter than subject: 107 - 312

Fln protein: HGDYFKCMSRNYCIVPGAEHYACMVDLLGRSGNLDEAQDFILSMPIQPTADVWGALLGACRIHCNVVLAECAAKYLFDLNPQNAGYYVLLSNTYAAASRWDDAAKVR

Protein Length: 108

Fln nts: ACATGGGGACTACTTCAAATGCATGAGTAGAAATTATTGCATCGTGCCAGGGGCAGAACATTATGCTTGTATGGTTGATCTTCTTGGTCGCAGTGGGAATCTGGACGAGGCTCAAGATTTCATCCTCAGTATGCCGATACAACCGACCGCTGATGTCTGGGGGGCCTTACTTGGTGCATGCAGAATTCACTGTAATGTTGTGCTCGCAGAATGTGCGGCAAAGTACCTGTTTGATCTCAATCCCCAAAATGCGGGATATTATGTTCTTTTGTCAAACACATATGCTGCTGCAAGTAGATGGGATGATGCAGCGAAGGTGAGAAC

Fln Alignment:

AllPineV4_c36355___FKCMSRNYCIVPGAEHYACMVDLLGRSGNLDEAQDFILSMPIQPTADVWGALLGACRIHCNVVLAECAAKYLFDLNPQNAGYYVLLSNTYAAASRWDDAAKVR
D5ADG9_______________YNCMTLDYAITPTVEHYACMVDLLGRAGHLNEAWDFIEKMPIEPGASVWGAFLGSCRIHCNIELGERVAELLLNLDPDNAGYYVLLSNIYAAAGRWDDVAKVR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
168		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain