SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene39808

Length: 459 nt

UniGene Fasta

>sp_v2.0_unigene39808
CGTCGTGACCTTGGCTGTCACTCATCGGCTTACAGACAACTTGTATAATCATTTTGTGGTGGCTACTGACAATGTACTTGCAGCATCTGTAGTAGTCTCATCAACAGTGAGGAATTCTGTAAAGCCAGAAAAGATAGTTTTTCATATCATTACAGATAGGAAGACATATGCAGCCATGCATGCATGGTTTGCTTTGCACTCTTTTCGTTCTGCCACTATTGAGGTGAAAGGTTTGCACCAATTCGATTGGTTGACAAAAGATAATGTCCCTGTGTTGGAAGCCATGGAAACTCATCTTGAAATTCGAAGATACTACCATGGGGACCATGCGATTGGGGCAAATCTTAATGACTCTCCAAACATCTTAGCTGCAAAACTGCAAGCTCGAAGCCCAAAATATATATCAATAATGAACCACTTGCGAATATATCTTCCAGAGTTTTTGCCAAGGTCACGACG

Ace file of the UniGene sp_v2.0_unigene39808

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Galacturonosyltransferase GAUT12/13/14/15-like protein n=1 Tax=Selaginella moellendorffii RepID=D8SK68_SELML	-	-	66%
FL-Next	Isoform 2 of Probable galacturonosyltransferase 13 OS=Arabidopsis thaliana GN=GAUT13	-	-	68%
Blast2go	alpha- -galacturonosyltransferase	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 8	IPR002495	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0WV13-2

Fln msg: Distance to subject end: 187 aas, your sequence is shorter than subject: 152 - 532

Fln protein: VVTLAVTHRLTDNLYNHFVVATDNVLAASVVVSSTVRNSVKPEKIVFHIITDRKTYAAMHAWFALHSFRSATIEVKGLHQFDWLTKDNVPVLEAMETHLEIRRYYHGDHAIGANLNDSPNILAAKLQARSPKYISIMNHLRIYLPEFLPRSR

Protein Length: 153

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCGGCTTACAGACAACTTGTATAATCATTTTGTGGTGGCTACTGACAATGTACTTGCAGCATCTGTAGTAGTCTCATCAACAGTGAGGAATTCTGTAAAGCCAGAAAAGATAGTTTTTCATATCATTACAGATAGGAAGACATATGCAGCCATGCATGCATGGTTTGCTTTGCACTCTTTTCGTTCTGCCACTATTGAGGTGAAAGGTTTGCACCAATTCGATTGGTTGACAAAAGATAATGTCCCTGTGTTGGAAGCCATGGAAACTCATCTTGAAATTCGAAGATACTACCATGGGGACCATGCGATTGGGGCAAATCTTAATGACTCTCCAAACATCTTAGCTGCAAAACTGCAAGCTCGAAGCCCAAAATATATATCAATAATGAACCACTTGCGAATATATCTTCCAGAGTTTTTGCCAAGGTCACGACG

Fln Alignment:

AllPineV4_c36230___LTDNLYNHFVVATDNVLAAXXXXXXXXXXXXKPEKIVFHIITDRKTYAAMHAWFALHSFRSATIEVKGLHQFDWLTKDNVPVLEAMETHLEIRRYYHGDHAIGANLND-SPNILAAKLQARSPKYISIMNHLRIYLPEFLP
Q0WV13-2_____________LSDNAYHHFVLATDNILAASVVVSSAVQSSSKPEKIVFHVITDKKTYAGMHSWFALNSVAPAIVEVKSVHQFDWLTRENVPVLEAVESHNSIRNYYHGNHIAGANLSETTPRTFASKLQSRSPKYISLLNHLRIYLPELFP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
307		66		33	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain