SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene39756

Length: 519 nt

Origin of reads: Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene39756
TCCCCTATCAGAGGTTGATAAAATTTAGATAGCCAAATGAGACCAGCAAATGCAGACACTGATGAAGATTCAAGTTCCGGGCACTCAACTAAAAAATTGGTCAAACAATATTTAGTGAAGTGGAAGTCATTGTCTTACCTTCATTGTTCATGGGTTCCTCTCGAAGAATTTGAGAAGGTTTTCAAGATATACCCACGTCTCAAGACAAGAATAAACAATTTTCATCGCCAAATGGATTCACTGAATATTTCCGAAGAGGATTGGGTTCCAATTCGATCAGAGTGGACAACTGTGGATAGAATCATTGCTAGCAGGATGTCTAATGATGGGCGGGAATATCTAGTTAAATGGAAAGAGCTAGCTTATGATGAATGCACGTGGGAAGTTGAGGAAGATATCTCTGCTTTTCGAGCGGAAATTGAAAAATTCAATTCAATTAAAGCTAGGGCAAAGATCCAAAATCAAACACCAAAGAAGAGGAAAGGTTTTTCTGTTGATGGAAAAGAAAATAAGCGCCAT

Ace file of the UniGene sp_v2.0_unigene39756 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CHD3-type chromatin-remodeling factor PICKLE [Arabidopsis thaliana] sp\|Q9S775.1\|PKL_ARATH RecName: Full=CHD3-type chromatin-remodeling factor PICKLE; AltName: Full=Protein GYMNOS gb\|AAF07084.1\|AF185578_1 GYMNOS/PICKLE [Arabidopsis thaliana] gb\|AAF13875.1\|	-	-	2.99878e-43	55%
FL-Next	sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Blast2go	chromatin remodeling complex subunit	-	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	71%
Blast2go	response to gibberellin stimulus	GO:0009739	Biological Process	71%
Blast2go	cell proliferation	GO:0008283	Biological Process	71%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	71%
Blast2go	cytokinin mediated signaling pathway	GO:0009736	Biological Process	71%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	71%
Blast2go	catalytic activity	GO:0003824	Molecular Function	71%
Blast2go	binding	GO:0005488	Molecular Function	71%
Blast2go	nucleus	GO:0005634	Cellular Component	71%
Blast2go	regulation of lateral root development	GO:2000023	Biological Process	71%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Rubredoxin-type fold	IPR004039	-	-
Sma3	Domain of unknown function DUF1086	IPR009462	-	-
Sma3	Domain of unknown function DUF1087	IPR009463	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9S775

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 1117 aas, your sequence is shorter than subject: 173 - 1384

Fln protein: SPIRG**NLDSQMRPANADTDEDSSSGHSTKKLVKQYLVKWKSLSYLHCSWVPLEEFEKVFKIYPRLKTRINNFHRQMDSLNISEEDWVPIRSEWTTVDRIIASRMSNDGREYLVKWKELAYDECTWEVEEDISAFRAEIEKFNSIKARAKIQNQTPKKRKGFSVDGKENKRH

Protein Length: 174

Fln nts: TCCCCTATCAGAGGTTGATAAAATTTAGATAGCCAAATGAGACCAGCAAATGCAGACACTGATGAAGATTCAAGTTCCGGGCACTCAACTAAAAAATTGGTCAAACAATATTTAGTGAAGTGGAAGTCATTGTCTTACCTTCATTGTTCATGGGTTCCTCTCGAAGAATTTGAGAAGGTTTTCAAGATATACCCACGTCTCAAGACAAGAATAAACAATTTTCATCGCCAAATGGATTCACTGAATATTTCCGAAGAGGATTGGGTTCCAATTCGATCAGAGTGGACAACTGTGGATAGAATCATTGCTAGCAGGATGTCTAATGATGGGCGGGAATATCTAGTTAAATGGAAAGAGCTAGCTTATGATGAATGCACGTGGGAAGTTGAGGAAGATATCTCTGCTTTTCGAGCGGAAATTGAAAAATTCAATTCAATTAAAGCTAGGGCAAAGATCCAAAATCAAACACCAAAGAAGAGGAAAGGTTTTTCTGTTGATGGAAAAGAAAATAAGCGCCAT

Fln Alignment:

AllPineV4_c36164___LDSQMRPANADTDEDSSSGHSTKKLVKQYLVKWKSLSYLHCSWVPLEEFEKVFKIYPRLKTRINNFHRQMDSLNISEEDWVPIRSEWTTVDRIIASRMSNDGREYLVKWKELAYDECTWEVEEDISAFRAEIEKFNSIKARAKIQNQTPKKR
Q9S775_______________LDCEMRPTKS-SEQGSSDAEPKPIFVKQYLVKWKGLSYLHCSWVPEKEFQKAYKSNHRLKTRVNNFHRQMESFNNSEDDFVAIRPEWTTVDRILACREEDGELEYLVKYKELSYDECYWESESDISTFQNEIQRFKDVNSRTRRSKDVDHKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain