SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene39704

Length: 493 nt

Origin of reads: Biogeco3 v1 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene39704
CGTCGTGACCTTGGCTGTCACTCAATTGGAGGCAGGTGGTGGATAGGAAGTTGAAGAGGCTGCATTCCCTCATTTTTGGCGCGGAAGTCTGTCTGGAGAGTGGAGATGCCCAAACGGCCCTGGGCCTGGGTTTAAGGTTGTCAGGGTTTCTGGAATCTGAATGCCGGGATACCACTGATAACCTTTACATCACCCCAATTCAGAGAGATCTTCACAGCAAAATGGACGTCGCTCGCCAAATGCTGGCTGCGGATGGTGACCGTCGCGCTTTTGAACAAGCAAGGTGCAAGGAAGATAGCATTTTCTTTAAAAGAGGAAAAGTTGATGTAGAAATGATCAAGCAATCGAGGTTTTATGAACCTCTGATTGACAAGAATTCTGTCCCTAAGAATAACGATCTGGGTTCCAACATGCCACAAAGAAGCCTTTTGCAGCAACCAAAAGAATGGACAGTCACCCATCTGAAAATTCATCAAAATCCCCAAGCAACATT

Ace file of the UniGene sp_v2.0_unigene39704

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WS02788.CR_H04 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02788_H04 3', mRNA sequence.	-	-	0.0	86%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	42%
Blast2go	fidgetin-like protein 1-like	-	-	5.80721e-26	59%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GJS9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 177 aas, your sequence is shorter than subject: 163 - 360

Fln protein: S*PWLSLNWRQVVDRKLKRLHSLIFGAEVCLESGDAQTALGLGLRLSGFLESECRDTTDNLYITPIQRDLHSKMDVARQMLAADGDRRAFEQARCKEDSIFFKRGKVDVEMIKQSRFYEPLIDKNSVPKNNDLGSNMPQRSLLQQPKEWTVTHLKIHQNPQAT

Protein Length: 164

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGGAGGCAGGTGGTGGATAGGAAGTTGAAGAGGCTGCATTCCCTCATTTTTGGCGCGGAAGTCTGTCTGGAGAGTGGAGATGCCCAAACGGCCCTGGGCCTGGGTTTAAGGTTGTCAGGGTTTCTGGAATCTGAATGCCGGGATACCACTGATAACCTTTACATCACCCCAATTCAGAGAGATCTTCACAGCAAAATGGACGTCGCTCGCCAAATGCTGGCTGCGGATGGTGACCGTCGCGCTTTTGAACAAGCAAGGTGCAAGGAAGATAGCATTTTCTTTAAAAGAGGAAAAGTTGATGTAGAAATGATCAAGCAATCGAGGTTTTATGAACCTCTGATTGACAAGAATTCTGTCCCTAAGAATAACGATCTGGGTTCCAACATGCCACAAAGAAGCCTTTTGCAGCAACCAAAAGAATGGACAGTCACCCATCTGAAAATTCATCAAAATCCCCAAGCAACATT

Fln Alignment:

AllPineV4_c36089___WRQVVDRKLKRLHSLIFGAEVCLESGDAQTALGLGLRLSGFLESECRDTTDNLYITPIQRDLHSKMDVARQMLAADGDRRAFEQARCKEDSIFFKRGKVDVEMIKQSRFYEPLIDKNSVPKNNDLGSNMPQRSLL
B9GJS9_______________WRKQVDENLKRLHSLQFGADLALEKRDFSAAHLLSLRLLGFLDSHSLSDADEALTRTIRRDAVSKLDSARRSLALESDRRAFEQAGRGLGQVFSRKGDIDIEKIKQSKYFRALLQKYNIKLSNKLDDRKDRQEKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain