SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene39698

Length: 459 nt

UniGene Fasta

>sp_v2.0_unigene39698
TACCAAGTAAACAGCCTACTAATGGAAACATGATTTTAGGTTTAGATAATATACTTAATTTGGTAATTCGCAAGAGAGGGGAAGAAAAACCATTGGAGAAGAGTGATGATCTCATTCGACATATGCAAGAGCAATTTAAAGCGAAGACTGGTAAATCTGAGTCAACCTATTATGCTGCAACAGATGTGGAAATTTTGAGATTCATGCTGGAGGCTTGCTGGGCTCCAATGCTGGCAGCATTCAGTGTTACTCTTGGCCAAAGTGATGATGAAGTGGTCACATTCCATTGTCTTGAGGGCTTCCGTTATGCGATCCATGTGACTGCTGTCATGGGTATGCAAACACAACGGGATGCTTTTGTAACCTCTGTGGCAAAGTTCACATCTCTCCACTCTGCTGCTGACATTAAGCAGAAGATATTGATGCTGTAAAGGCCATTATCACTATTGCTGATGAAGA

Ace file of the UniGene sp_v2.0_unigene39698

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SEC7-like guanine nucleotide exchange protein [Arabidopsis thaliana] gb\|AAF76474.1\|AC020622_8 Contains similarity to a guanine nucleotide exchange factor from Homo sapiens gb\|AF111162 and contains a Sec7 PF\|01369 domain [Arabidopsis thaliana] gb\|AEE27360.	-	-	71%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	79%
Blast2go	brefeldin a-inhibited guanine nucleotide-exchange protein 1-like	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	megagametogenesis	GO:0009561	Biological Process	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%
Blast2go	cytosol	GO:0005829	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	SEC7-like	IPR000904	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Domain of unknown function DUF1981, SEC7 associated	IPR015403	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9IC07

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 821 aas, your sequence is shorter than subject: 143 - 1783

Fln protein: PSKQPTNGNMILGLDNILNLVIRKRGEEKPLEKSDDLIRHMQEQFKAKTGKSESTYYAATDVEILRFMLEACWAPMLAAFSVTLGQSDDEVVTFHCLEGFRYAIHVTAVMGMQTQRDAFVTSVAKFTSLHSAADIKQKILML*

Protein Length: 144

Fln nts: TACCAAGTAAACAGCCTACTAATGGAAACATGATTTTAGGTTTAGATAATATACTTAATTTGGTAATTCGCAAGAGAGGGGAAGAAAAACCATTGGAGAAGAGTGATGATCTCATTCGACATATGCAAGAGCAATTTAAAGCGAAGACTGGTAAATCTGAGTCAACCTATTATGCTGCAACAGATGTGGAAATTTTGAGATTCATGCTGGAGGCTTGCTGGGCTCCAATGCTGGCAGCATTCAGTGTTACTCTTGGCCAAAGTGATGATGAAGTGGTCACATTCCATTGTCTTGAGGGCTTCCGTTATGCGATCCATGTGACTGCTGTCATGGGTATGCAAACACAACGGGATGCTTTTGTAACCTCTGTGGCAAAGTTCACATCTCTCCACTCTGCTGCTGACATTAAGCAGAAGATATTGATGCTGTAAAGGCCATTATCACTATTGCTGATGAAGA

Fln Alignment:

AllPineV4_c36082___KQPTNGNMILGLDNILNLVIRKRGEEKPLEKSDDLIRHMQEQFKAKTGKSESTYYAATDVEILRFMLEACWAPMLAAFSVTLGQSDDEVVTFHCLEGFRYAIHVTAVMGMQTQRDAFVTSVAKFTSLHSAADIKQK
B9IC07_______________KQSLNSNRILGLDSILNIVIRKRGEEKHMETSDDLIRHMQEQFKEKARKSESVYYAATDVVILRFMVEVCWAPMLAAFSVPLDQSDDEVVIALCLEGIRCAIHVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
148	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain