SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene39697

Length: 452 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene39697
ACCACCCCTGCTCACATTCGAAGGGTGGTTCTTGGCAACCCTGGAATTTTCTTATATAAATCCAAAAAGGACTTAAAGTCTAGGCTCAGCTATCTAAGGTCTATCATCAACAAAGAGGATATGTGCAAGCTTGTTTATACCAATTCAAGAATTCTTGATCATAGTGAGGATAAGCTTAAATCTGCGATTTCAGTTTTGCAAAGATTGCGTATTGAGGGCGATGCATTATCAAAGTTATTGGCAAGGATACCCCGTCTTCTCTCCTATACGGAGGAAAAAGTTATGGAGTCATTTGAAGTGGCTGAGCGTCTGGGGCTTGAGAGGGGATCCAAGATATTTGGGCACGTTCGCATTGCTGTCTAGGAGTGCGAAAAGAAATTATAGATCGAAAACTGCAGCTTTTGGGCTGTTTAGGTTCCTCTGAAAAACAAATTTACAAGGTCTCATGTTCG

Ace file of the UniGene sp_v2.0_unigene39697 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mTERF domain containing protein	-	-	5.0e-05	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	unknown [Picea sitchensis]	-	-	3.12417e-30	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochodrial transcription termination factor-related	IPR003690	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AC01

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 106 aas, your sequence is shorter than subject: 121 - 359

Fln protein: TTPAHIRRVVLGNPGIFLYKSKKDLKSRLSYLRSIINKEDMCKLVYTNSRILDHSEDKLKSAISVLQRLRIEGDALSKLLARIPRLLSYTEEKVMESFEVAERLGLERGSKIFGHVRIAV*

Protein Length: 122

Fln nts: ACCACCCCTGCTCACATTCGAAGGGTGGTTCTTGGCAACCCTGGAATTTTCTTATATAAATCCAAAAAGGACTTAAAGTCTAGGCTCAGCTATCTAAGGTCTATCATCAACAAAGAGGATATGTGCAAGCTTGTTTATACCAATTCAAGAATTCTTGATCATAGTGAGGATAAGCTTAAATCTGCGATTTCAGTTTTGCAAAGATTGCGTATTGAGGGCGATGCATTATCAAAGTTATTGGCAAGGATACCCCGTCTTCTCTCCTATACGGAGGAAAAAGTTATGGAGTCATTTGAAGTGGCTGAGCGTCTGGGGCTTGAGAGGGGATCCAAGATATTTGGGCACGTTCGCATTGCTGTCTAGGAGTGCGAAAAGAAATTATAGATCGAAAACTGCAGCTTTTGGGCTGTTTAGGTTCCTCTGAAAAACAAATTTACAAGGTCTCATGTTCG

Fln Alignment:

AllPineV4_c36081___TTPAHIRRVVLGNPGIFLYKSKKDLKSRLSYLRSIINKEDMCKLVYTNSRILDHSEDKLKSAISVLQRLRIEGDALSKLLARIPRLLSYTEEKVMESFEVAERLGLERGSKIF
D5AC01_______________TSPAQIRRVVLYNPSFFFRSAERNIQSKLSLLRTVVKEEHLCKLVYADSRIFCSREQRLRSSISLLQKLGVEGEALSEILAWHPHLLTASEEKVTESFKQVEDLGFKKGSKMF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain