SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene39655

Length: 238 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene39655
AATGTTCTGACTGTTGTGGAACTGCTGCAGCAACTTCCGGTTCTATGGATGTTCCTCTGCCATTGGAAAACTTTCTCGTCAGCTGAATACAAAATGCACAACAGATCCTTTGGAACAAAAACGAATGCAAGTGGTTCTTCTATTACCAGGCAGTTTCAATCCACCAACTTATATGCACTTGCGCATGTTTGAACTGGCCAGGGATCAATTGCTATCAGATGGATATGTGGTTCTTGGG

Ace file of the UniGene sp_v2.0_unigene39655

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nicotinamide-nucleotide adenylyltransferase-like [Oryza sativa Japonica Group]	-	-	4.0e-08	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	nicotinamide mononucleotide adenylyltransferase	-	-	9.97111e-21	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nicotinate-nucleotide adenylyltransferase.	EC:2.7.7.18	-	9.97111e-21	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Nicotinate and nicotinamide metabolism	00760		9.97111e-21	78%
Blast2go	Metabolic pathways	01100		9.97111e-21	78%
Blast2go	Nicotinamide-nucleotide adenylyltransferase.	EC:2.7.7.1	-	9.97111e-21	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Nicotinate and nicotinamide metabolism	00760		9.97111e-21	78%
Blast2go	Metabolic pathways	01100		9.97111e-21	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	NAD biosynthetic process	GO:0009435	Biological Process	9.97111e-21	78%
Blast2go	pollen tube growth	GO:0009860	Biological Process	9.97111e-21	78%
Blast2go	pollen development	GO:0009555	Biological Process	9.97111e-21	78%
Blast2go	nicotinate-nucleotide adenylyltransferase activity	GO:0004515	Molecular Function	9.97111e-21	78%
Blast2go	nicotinamide-nucleotide adenylyltransferase activity	GO:0000309	Molecular Function	9.97111e-21	78%

Source	InterPros	Term	Type	Identity
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Probable nicotinate-nucleotide adenylyltransferase	IPR005248	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8W4

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 68 and 68, Distance to subject end: 204 aas, your sequence is shorter than subject: 79 - 478

Fln protein: CSDCCGTAAATSGSMDVPLPLxxLSRQLNTKCTTDPLEQKRMQVVLLLPGSFNPPTYMHLRMFELARDQLLSDGYVVLG

Protein Length: 80

Fln nts: AATGTTCTGACTGTTGTGGAACTGCTGCAGCAACTTCCGGTTCTATGGATGTTCCTCTGCCATTGxxxxxxCTTTCTCGTCAGCTGAATACAAAATGCACAACAGATCCTTTGGAACAAAAACGAATGCAAGTGGTTCTTCTATTACCAGGCAGTTTCAATCCACCAACTTATATGCACTTGCGCATGTTTGAACTGGCCAGGGATCAATTGCTATCAGATGGATATGTGGTTCTTGGG

Fln Alignment:

AllPineV4_c36031___SDCCGTAAATSGSMDVPLPLEKLSRQLNTKCTTDPLEQKRMQVVLLLPGSFNPPTYMHLRMFE
D5A8W4_______________SDCCGTAAANSGSMDVPLPLEKISCQLNRKCATDPLEQKRTQVVLLLPGSFNPPTYMHLRMFD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain