SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene39627

Length: 235 nt

UniGene Fasta

>sp_v2.0_unigene39627
AAAGCAGGCTGGTGATGCACTTAAGCCTCATTTACATTCGCTTGTGCCAAAGCTTGTTCGCTATCAGTACGATCCAGATAAAAATATCCGGGAGGCAATGGAGAACATTTGGCGTTCACTGATGGCAGATCCCAAGAAGACCATCGATGAATTCTTTGATGATATAATTGTGGATTTATTGACACAAAGTGGATCTAGACTTTGGCGTTCTCGTGAGTCTTCATGCCTTGCTCTT

Ace file of the UniGene sp_v2.0_unigene39627

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os12g0134200 protein (Fragment) n=3 Tax=Oryza sativa Japonica Group RepID=Q0IQA2_ORYSJ	-	-	2.0e-28	73%
FL-Next	tr=HEAT repeat family protein, expressed; Oryza sativa subsp. japonica (Rice).	-	-	0.0	73%
Blast2go	heat repeat family expressed	-	-	1.04267e-33	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	1.04267e-33	89%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q2QY31

Fln msg: Distance to subject end: 670 aas, your sequence is shorter than subject: 78 - 889

Fln protein: KQAGDALKPHLHSLVPKLVRYQYDPDKNIREAMENIWRSLMADPKKTIDEFFDDIIVDLLTQSGSRLWRSRESSCLAL

Protein Length: 79

Fln nts: AAAGCAGGCTGGTGATGCACTTAAGCCTCATTTACATTCGCTTGTGCCAAAGCTTGTTCGCTATCAGTACGATCCAGATAAAAATATCCGGGAGGCAATGGAGAACATTTGGCGTTCACTGATGGCAGATCCCAAGAAGACCATCGATGAATTCTTTGATGATATAATTGTGGATTTATTGACACAAAGTGGATCTAGACTTTGGCGTTCTCGTGAGTCTTCATGCCTTGCTCTT

Fln Alignment:

AllPineV4_c35994___KQAGDALKPHLHSLVPKLVRYQYDPDKNIREAMENIWRSLMADPKKTIDEFFDDIIVDLLTQSGSRLWRSRESSCLAL
Q2QY31_______________KQAGEALQPHLHTLIPRLVRYQYDPDKNIQDSMAHIWKLIVADPKKTIDEHYDLIVEDLLVQSGSRLWRSREASCLAL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain