SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene39353

Length: 546 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene39353
GAATTGGAACCACAGAATGCTGGCAACTATGTGCTACTGTCAAATCTTTATGCTGTAGTTGGCAGGTGGGATGATGTCCGCAGAGTTAGAGCGATGATGAAAGATCGAGGGCTGAAAAAAGAGCCAGGTTGTAGTTGGATGGAGGTTAACAACACCTTGCATACATTTCTAACAGGGAGTACCACACATCCACAAACCAAGGAAATACATGCAACATTAGAGGAATTAAGTCTGCAGATGAAAGACTTAGGGTATAGACCTGATACAAACTTTGTTTTGCATGATGTAGAAATGGAGCAAAAGGAACATATTCTCTTTTATCATAGTGAAAAGTTAGCCATTGCTTTTGGCCTTATCAATATGCCTGCTGGAACACCTATTCACATCATGAAAAACCTTCGTGTATGTGGTGATTGCCATACTGCTACGAAGTTCATCTCTAAGATTGTCAAACGACAAATTATTGTGAGAGATTCTAATCGGTTTCACCATTTCAATGATGGATTCTGTTCTTGTGGGGATTATTGGTGATGTCAAAGGAACATT

Ace file of the UniGene sp_v2.0_unigene39353

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	pentatricopeptide repeat-containing protein	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK	IPR000550	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR011523	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: your sequence is shorter than subject: 177 - 246

Fln protein: ELEPQNAGNYVLLSNIYAVVGRWDDVRRVRAMMKDRGLKKAPGCSWMEVNNTLHTFLTGSTTHPQTKEIHATLEELSLQMKDLGYRPDTNFVLHDVEMEQKEHILFYHSEKLAIAFGLINMPAGTPIHIMKNLRVCGDCHTATKFISKIVKRQIIVRDSNRFHHFNDGFCSCGDYW*

Protein Length: 178

Fln nts: GAATTGGAACCACAGAATGCTGGCAACTATGTGCTACTGTCAAATaTTTATGCTGTAGTTGGCAGGTGGGATGATGTCCGCAGAGTTAGAGCGATGATGAAAGATCGAGGGCTGAAAAAAGcGCCAGGTTGTAGTTGGATGGAGGTTAACAACACCTTGCATACATTTCTAACAGGGAGTACCACACATCCACAAACCAAGGAAATACATGCAACATTAGAGGAATTAAGTCTGCAGATGAAAGACTTAGGGTATAGACCTGATACAAACTTTGTTTTGCATGATGTAGAAATGGAGCAAAAGGAACATATTCTCTTTTATCATAGTGAAAAGTTAGCCATTGCTTTTGGCCTTATCAATATGCCTGCTGGAACACCTATTCACATCATGAAAAACCTTCGTGTATGTGGTGATTGCCATACTGCTACGAAGTTCATCTCTAAGATTGTCAAACGACAAATTATTGTGAGAGATTCTAATCGGTTTCACCATTTCAATGATGGATTCTGTTCTTGTGGGGATTATTGGTGA___TGTCAAAGGAACATT

Fln Alignment:

AllPineV4_c35598___ELEPQNAGNYVLLSNIYAXXXXXXXXXXXXAMMKDRGLKKAPGCSWMEVNNTLHTFLTGSTTHPQTKEIHATLEELSLQMKDLGYRPDTNFVLHDVEMEQKEHILFYHSEKLAIAFGLINMPAGTPIHIMKNLRVCGDCHTATKFISKIVKRQIIVRDSNRFHHFNDGFCSCGDYW
D5AAE0_______________QLEPHNAAKYVLLSNIYAAAGRWDDVAKVRKIMKDRGVQKQPGCSWIEVKNKVHTFMVEDKSHPQTEEIYSTLEELARQMEAAGYVPDTNFVLHDVEMEQKEHSLYHHSEKLAIAFGLISTLPGLPVRIIKNLRVCGDCHTATKFISKIVEREIIIRDANRFHHFKDGLCSCGDYW

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
325		33		66	0.997452
447	25			75	0.996473
448		25		75	0.996473
449	25		75		0.996473
451		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain