SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene39298

Length: 354 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene39298
ATTGAGGATGAAGAGGATGACAGTAAAGAGAAAGTTTCAAAGCAAAGAAAAATTGAAGCATCGCCAGAAGAATGTGACCAGGCTGTAGAAGGGTTGAGCTTAGTAAAAGCAAAGGCGAAACAAGTGCAGGATTTTCTCAAGAAAGATGAAAGATTTGTAAAGAAATTTTGGGCTACAATACTTGGAATCGGATCTGCACTAAAATTGGTGGCATCTATGAGCAGGGAAGATTGGGCCAGGAACTTCATCAGTGGAAACATCATTTCTTGGAAGCATTGCAACATTATTGGGTTGGAACTAAACTTCTTTGGGCCGACATTAGGATATCTTTCAGGCTTCTACTGAAGCTTGCGA

Ace file of the UniGene sp_v2.0_unigene39298

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ca2+ binding protein cbp1 n=1 Tax=Triticum aestivum RepID=Q0IKM2_WHEAT	-	-	1.0e-29	69%
FL-Next	tr=Ca2+ binding protein cbp1; Triticum aestivum (Wheat).	-	-	0.0	69%
Blast2go	letm1 and ef-hand domain-containing protein mitochondrial-like	-	-	1.97994e-29	76%

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	LETM1-like	IPR011685	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q0IKM2

Fln msg: Overlapping hits, possible frame ERROR between 255 and 240, Distance to subject end: 525 aas, your sequence is shorter than subject: 118 - 767

Fln protein: IEDEEDDSKEKVSKQRKIEASPEECDQAVEGLSLVKAKAKQVQDFLKKDERFVKKFWATILGIGSALKLVASMSREDWAxxxxxxxHHFLEALQHYWVGTKLLWADIRISFRLLLKLA

Protein Length: 119

Fln nts: ATTGAGGATGAAGAGGATGACAGTAAAGAGAAAGTTTCAAAGCAAAGAAAAATTGAAGCATCGCCAGAAGAATGTGACCAGGCTGTAGAAGGGTTGAGCTTAGTAAAAGCAAAGGCGAAACAAGTGCAGGATTTTCTCAAGAAAGATGAAAGATTTGTAAAGAAATTTTGGGCTACAATACTTGGAATCGGATCTGCACTAAAATTGGTGGCATCTATGAGCAGGGAAGATTGGGCCxxxxxxxxxxxxxxxxxxxxxCATCATTTCTTGGAAGCATTGCAACATTATTGGGTTGGAACTAAACTTCTTTGGGCCGACATTAGGATATCTTTCAGGCTTCTACTGAAGCTTGCGA

Fln Alignment:

AllPineV4_c35519___QRKIEASPEECDQAVEGLSLVKAKAK--QVQDFLKKDERFVKKFWATILGIGSALKLVASMSREDWARxxxxxKHHFLEALQHYWVGTKLLWADIRISFRLLLKLA
Q0IKM2_______________KRKKEASPEECDQAVEGLSTAKAKAKAKQVQDSLKADQSIVKKFWARLLGIGPALRAVASMSRADWAAxxxxxKDEFISTLQHYWLGTKLLWADIRISSRLLVKLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain