SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene39130

Length: 428 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene39130
CGTCGTGACCTTGGCTGTCACTCATATTATAGAAGATTTATTGAAACTTCACCAAGATAGAATCTCCGCTCTTCAAATTACTTACAAGGACTGTGAATTCAAATGGGATCCTGAATGCCAATCTGCATTTGAAGCTTTAAAACAAGGATATCTGGAGCACCCATTCTGAGAGGGCCAAATTGGAAACTTCCTTTCCATATTTCTACAGATGCTTCAGATACATCTCTAGGAGTTGTATTGGGACAAAAGGATTTGGTCCCTTATGCCATTTACTACACCAGTAAAAATTTGACTCCCATTGAGTTAAATTATATTGTGACAGAGAAATAGTTCTTAGTTGTTGTACATGCAATTAATAAATTTAGACACTACATAACCGGCTATGAAACTTTTGTCCATACTAATCATTCTGCAATTAGATATTTCGC

Ace file of the UniGene sp_v2.0_unigene39130

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	50%
Blast2go	hypothetical protein VITISV_027006 [Vitis vinifera]	-	-	2.19928e-24	67%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	KID repeat	IPR003900	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Fatty acid hydroxylase	IPR006694	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BY78

Fln msg: Overlapping hits, possible frame ERROR between 145 and 139, Distance to subject end: 786 aas, your sequence is shorter than subject: 142 - 1947

Fln protein: VVTLAVTHIIEDLLKLHQDRISALQITYKDCEFKWDPECQSAFEAxxxxISGAPILRGPNWKLPFHISTDASDTSLGVVLGQKDLVPYAIYYTSKNLTPIELNYIVTEK*FLVVVHAINKFRHYITGYETFVHTNHSAIRYF

Protein Length: 143

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATTATAGAAGATTTATTGAAACTTCACCAAGATAGAATCTCCGCTCTTCAAATTACTTACAAGGACTGTGAATTCAAATGGGATCCTGAATGCCAATCTGCATTTGAAGCTxxxxxxxxxxxxATATCTGGAGCACCCATTCTGAGAGGGCCAAATTGGAAACTTCCTTTCCATATTTCTACAGATGCTTCAGATACATCTCTAGGAGTTGTATTGGGACAAAAGGATTTGGTCCCTTATGCCATTTACTACACCAGTAAAAATTTGACTCCCATTGAGTTAAATTATATTGTGACAGAGAAATAGTTCTTAGTTGTTGTACATGCAATTAATAAATTTAGACACTACATAACCGGCTATGAAACTTTTGTCCATACTAATCATTCTGCAATTAGATATTTCGC

Fln Alignment:

AllPineV4_c35259___QITYKDCEFKWDPECQSAFEALxxRISGAPILRGPNWKLPFHISTDASDTSLGVVLGQK-DLVPYAIYYTSKNLTPIELNYIVTEK*FLVVVHAINKFRHYITGYETFVHTNHSAIRY
A5BY78_______________ELLVKDAKFEWDDKCQRSFELLxxFLTSAPIVRAPNWELPFEVMCDSSDYAIGAILGQREDGKPYVIYYASKSLNDAQRNYTTTEKELLVVVYALDKFRAYLIGSSIVVFTDHSALKY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain