SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene39076

Length: 535 nt

UniGene Fasta

>sp_v2.0_unigene39076
ATGGGTCATGCATGTGATACAGAGGTTGCATACATTGTATTAAGAAAGAGAGCCCAGTTGGTCATGGGAAGATCACTTGTTTCAGTATATATTGTGGATCTCAAGCTGATTTTGGCAATGGCAAGTCCTGTGTATGGGTAGACGTGCTGGGCGGTGGTAAAGATGTCTTGTCAGAATTTTCTTGTTATTTTGGAGATACATCTATTCAAAAGGTTTGGCATAATTATAGTTTTGACAAGCATATCATAGAAAATCATGGGATTGATGTCAAGGGGTTCCATGCTGATACGATGCATCTTGCACGACTATGGAATTCTGCGAGGAGTCGAGAAGGTGGATATTCACTTGAATCTCTTACAAAGGATCCAAAGGTCATGGATGGAGGTGGTGCAGAAACTGAAGATGAGCTGATTATGGGCAAGGAGTCTATGAAATCGATATTTGGGAAAAAAAAGATAAAGAAGGATGGCACAGAGGGGAAAGTTGTGACCCTTCCACCTGTTGAAGAGCTCCAAAGAACTGAACGCATACCATG

Ace file of the UniGene sp_v2.0_unigene39076

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA polymerase A family protein, putative n=3 Tax=Arabidopsis thaliana RepID=Q9C6J5_ARATH	-	-	59%
FL-Next	tr=At1g50840/F8A12_8; Arabidopsis thaliana (Mouse-ear cress).	-	-	67%
Blast2go	dna polymerase	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	plastid DNA replication	GO:0033259	Biological Process	79%
Blast2go	double-strand break repair	GO:0006302	Biological Process	79%
Blast2go	mitochondrial DNA replication	GO:0006264	Biological Process	79%
Blast2go	catalytic activity	GO:0003824	Molecular Function	79%
Blast2go	nucleoid	GO:0009295	Cellular Component	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	DNA-directed DNA polymerase, family A, palm domain	IPR001098	-	-
Sma3	DNA polymerase A	IPR002298	-	-
Sma3	3'-5' exonuclease domain	IPR002562	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q8W105

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 583 aas, your sequence is shorter than subject: 177 - 1049

Fln protein: GSCM*YRGCIHCIKKESPVGHGKITCFSIYCGSQADFGNGKSCVWVDVLGGGKDVLSEFSCYFGDTSIQKVWHNYSFDKHIIENHGIDVKGFHADTMHLARLWNSARSREGGYSLESLTKDPKVMDGGGAETEDELIMGKESMKSIFGKKKIKKDGTEGKVVTLPPVEELQRTERIP

Protein Length: 178

Fln nts: ATGGGTCATGCATGTGATACAGAGGTTGCATACATTGTATTAAGAAAGAGAGCCCAGTTGGTCATGGGAAGATCACTTGTTTCAGTATATATTGTGGATCTCAAGCTGATTTTGGCAATGGCAAGTCCTGTGTATGGGTAGACGTGCTGGGCGGTGGTAAAGATGTCTTGTCAGAATTTTCTTGTTATTTTGGAGATACATCTATTCAAAAGGTTTGGCATAATTATAGTTTTGACAAGCATATCATAGAAAATCATGGGATTGATGTCAAGGGGTTCCATGCTGATACGATGCATCTTGCACGACTATGGAATTCTGCGAGGAGTCGAGAAGGTGGATATTCACTTGAATCTCTTACAAAGGATCCAAAGGTCATGGATGGAGGTGGTGCAGAAACTGAAGATGAGCTGATTATGGGCAAGGAGTCTATGAAATCGATATTTGGGAAAAAAAAGATAAAGAAGGATGGCACAGAGGGGAAAGTTGTGACCCTTCCACCTGTTGAAGAGCTCCAAAGAACTGAACGCATACCATG

Fln Alignment:

AllPineV4_c35192___IKKESPVGHGKITCFSIYCGSQADFGNGKSCVWVDVLG-GGKDVLSEFSCYFGDTSIQKVWHNYSFDKHIIENHGIDVKGFHADTMHLARLWNSARSREGGYSLESLTKDPKVMDGGGAETEDEL-IMGKESMXXXXXXXXXXXXXXXXXVVTLPPVEELQRTER
Q8W105_______________VKEETPVDHGELICFSIYCGPEADFGNGKSCIWVDVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNHGIEISGFHADTMHMARLWDSARRIKGGYSLEALTSDPKVL--GGTQTKEEAEFLGKISMKTIFGKRKLKKDGSEGKIVVIPPVEELQREDR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
139		33	66		0.997476
156	33		66		0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain