SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene39049

Length: 214 nt

UniGene Fasta

>sp_v2.0_unigene39049
ATGGGGGATATGCTTCCAGCTATTTGGTTCATCTTCAGTAGGAGAGGTTGCGATGAAGCTGTTAAGTACCTTGAAAATTCCAGACTTCTGAATGATTATGAAGAGTGCAAAGTTGAGGCAGCATTGCAGATATTTCGGGCACAGTATCCAGATGCAGTAAGGGAGGATGCTGTTAAGTATCTTCTCCAAGGGGTTGCTGCTCATCATGCAGGCT

Ace file of the UniGene sp_v2.0_unigene39049

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[L] COG4581 Superfamily II RNA helicase	-	-	3.0e-11	49%
FL-Next	sp=DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	68%
Blast2go	dead-box atp-dependent rna helicase chloroplastic-like	-	-	9.83692e-26	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	9.83692e-26	82%

Source	KEGGs	Term	e value	Identity
Blast2go	Purine metabolism	00230	9.83692e-26	82%
Blast2go	Lipopolysaccharide biosynthesis	00540	9.83692e-26	82%
Blast2go	Folate biosynthesis	00790	9.83692e-26	82%
Blast2go	Metabolic pathways	01100	9.83692e-26	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasmodesmata-mediated intercellular transport	GO:0010497	Biological Process	9.83692e-26	82%
Blast2go	posttranscriptional gene silencing	GO:0016441	Biological Process	9.83692e-26	82%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	9.83692e-26	82%
Blast2go	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	GO:0016818	Molecular Function	9.83692e-26	82%
Blast2go	cytoplasmic stress granule	GO:0010494	Cellular Component	9.83692e-26	82%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	9.83692e-26	82%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	DSH, C-terminal	IPR012961	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: B9DFG3

Fln msg: Distance to subject end: 667 aas, your sequence is shorter than subject: 71 - 1171

Fln protein: MGDMLPAIWFIFSRRGCDEAVKYLENSRLLNDYEECKVEAALQIFRAQYPDAVREDAVKYLLQGVAAHHAG

Protein Length: 72

Fln nts: ATGGGGGATATGCTTCCAGCTATTTGGTTCATCTTCAGTAGGAGAGGTTGCGATGAAGCTGTTAAGTACCTTGAAAATTCCAGACTTCTGAATGATTATGAAGAGTGCAAAGTTGAGGCAGCATTGCAGATATTTCGGGCACAGTATCCAGATGCAGTAAGGGAGGATGCTGTTAAGTATCTTCTCCAAGGGGTTGCTGCTCATCATGCAGGCT

Fln Alignment:

AllPineV4_c35157___DMLPAIWFIFSRRGCDEAVKYLENSRLLNDYEECKVEAALQIFRAQYPDAVREDAVKYLLQGVAAHHAG
B9DFG3_______________NMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEVELALKKFRVLYPDAVRESAEKGLLRGIAAHHAG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
112	66		33		0.997453
157	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain