SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene39033

Length: 424 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene39033
GTTCGCTGCAGACGACACACAAGACGAGTAGTGCACATAGATCTTCATGGATCTGAGTTGGAAGGTACTCTGTCTTTTTCTCTTGGTAGCCTTTCTTTGTTGAAGGTTTTGAATCTTTCTGATAATAATTTGAGTGGAGTAATTCCGCCCGAATTTGGGCGACTTAAAGCACTGAGAATACTCGATCTTAGCAATAATTGGATTCTCGGAGGATCTGTTCCCAAGTCATTGTGTAATTGCAGCCACCTCAAATGGATCGGACTTAGCTCAATCAACTTGACAGGAACCATACCTGCAGAGTTTGGTCGTCTAGTCGAGTTGGAACATCTAGACTTGAGTGAAAATCCACATCTGAGTGGGAGTATTCCAGCTACTTGGGCAACTGCACCTCTCTATCTTATCTTGACCTCAGTGATAACACATT

Ace file of the UniGene sp_v2.0_unigene39033 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[S] COG4886 Leucine-rich repeat (LRR) protein	-	-	2.0e-05	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	serine threonine-protein kinase bri1-like 2	-	-	1.45477e-33	67%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Domain of unknown function DUF1618	IPR011676	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTA1

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 659 aas, your sequence is shorter than subject: 141 - 946

Fln protein: VRCRRHTRRVVHIDLHGSELEGTLSFSLGSLSLLKVLNLSDNNLSGVIPPEFGRLKALRILDLSNNWILGGSVPKSLCNCSHLKWIGLSSINLTGTIPAEFGRLVELEHLDLSENPHLSGSIxxxLGNCTSLSYLDLSDNT

Protein Length: 142

Fln nts: GTTCGCTGCAGACGACACACAAGACGAGTAGTGCACATAGATCTTCATGGATCTGAGTTGGAAGGTACTCTGTCTTTTTCTCTTGGTAGCCTTTCTTTGTTGAAGGTTTTGAATCTTTCTGATAATAATTTGAGTGGAGTAATTCCGCCCGAATTTGGGCGACTTAAAGCACTGAGAATACTCGATCTTAGCAATAATTGGATTCTCGGAGGATCTGTTCCCAAGTCATTGTGTAATTGCAGCCACCTCAAATGGATCGGACTTAGCTCAATCAACTTGACAGGAACCATACCTGCAGAGTTTGGTCGTCTAGTCGAGTTGGAACATCTAGACTTGAGTGAAAATCCACATCTGAGTGGGAGTATTCCxxxxxxCTTGGGCAACTGCACCTCTCTATCTTATCTTGACCTCAGTGATAACACATT

Fln Alignment:

AllPineV4_c35135___GVIPPEFGRLKALRILDLSNNWILGGSVPKSLCNCSHLKWIGLSSINLTGTIPAEFGRLVELEHLDLSENPHLSGSIPATxxLGNCTSLSYLDLSDNT
C0PTA1_______________GGIPPEFGRLKALRTLDLTFNEMLGGSVPKSLLNCTHLKWIGLANINLTGTIPTEFGRLVELEHLDLSSNYYLSGSIPTSxxLGNCTSLSHLDLSGNS

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
120	66		33		0.997476
181		50	50		1.0
182		50		50	1.0
185	50	50			1.0
194	25	50			0.995533
245	50		50		1.0
251	50			50	1.0
293	66		33		0.997471
294		66	33		0.997471
344	66	33			0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain