SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene38894

Length: 395 nt

Origin of reads: Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene38894
ATCCAGTCGATATCTGATCGAGAATTCTTGATTCGAGTTTCCTATCTAGAAATTTATAATGAAGAGATCAATGACCTCCTTGCTCCAGAGAACAAGAAACTCCAAGTCCATGAAAACTTAGAGCGTGGCATATTTGTTGCGGGTCTAAGAGAGGAAATTGTGAACACCCCAGATCAAGTTTTTGATCTCATTGGCCTAGGAGAAGCACACCGACATGTTGGAGAGACAAACATGAATGTACGTAGTAGCAGGTCACATACGATTTTTCGGATGGTTATTGAAAGCAGAGACAAGGATGCAGAGTTAGATGGAAGTTCATATAACAAGGATACTGTGAGAGTTTCTGTTCTGAATTTGGTTGATTTAGCTGGTTCTGAGCGAGTTGCAAAGACATT

Ace file of the UniGene sp_v2.0_unigene38894

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative kinesin-like centromere protein [Arabidopsis thaliana]	-	-	4.2039e-45	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	p-loop containing nucleoside triphosphate hydrolase-like protein	-	-	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACB2

Fln msg: Distance to subject end: 367 aas, your sequence is shorter than subject: 131 - 509

Fln protein: IQSISDREFLIRVSYLEIYNEEINDLLAPENKKLQVHENLERGIFVAGLREEIVNTPDQVFDLIGLGEAHRHVGETNMNVRSSRSHTIFRMVIESRDKDAELDGSSYNKDTVRVSVLNLVDLAGSERVAKT

Protein Length: 132

Fln nts: ATCCAGTCGATATCTGATCGAGAATTCTTGATTCGAGTTTCCTATCTAGAAATTTATAATGAAGAGATCAATGACCTCCTTGCTCCAGAGAACAAGAAACTCCAAGTCCATGAAAACTTAGAGCGTGGCATATTTGTTGCGGGTCTAAGAGAGGAAATTGTGAACACCCCAGATCAAGTTTTTGATCTCATTGGCCTAGGAGAAGCACACCGACATGTTGGAGAGACAAACATGAATGTACGTAGTAGCAGGTCACATACGATTTTTCGGATGGTTATTGAAAGCAGAGACAAGGATGCAGAGTTAGATGGAAGTTCATATAACAAGGATACTGTGAGAGTTTCTGTTCTGAATTTGGTTGATTTAGCTGGTTCTGAGCGAGTTGCAAAGACATT

Fln Alignment:

AllPineV4_c34914___DREFLIRVSYLEIYNEEINDLLAPENKKLQVHENLERGIFVAGLREEIVNTPDQVFDLIGLGEAHRHVGETNMNVRSSRSHTIFRMVIESRDKDAELDGSSYNKDTVRVSVLNLVDLAGSERVAKT
D5ACB2_______________EQGFRLWLSFFEIYGGKLYDLLG-DRRKLCMREDARQQVCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLTIKKHGEGKELKGGR------TVGKLSFIDLAGSERGADT

SNPs (tot: 3)

Position	A %	G %	T %	Probability
88	33	66		0.997458
89	66		33	0.997458
91	66		33	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain